PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30473.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 294aa    MW: 33551.6 Da    PI: 7.6395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30473.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05112131120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C++C+k F+r  n++ H+
  KZV30473.1 112 FSCSICNKAFNRYNNMQMHM 131
                 89*****************9 PP
2zf-C2H211.70.00078197219123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +C k+F  + + ++H +++
  KZV30473.1 197 FRCRKCAKPFAVRGDWRTHEKNC 219
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-5108135No hitNo description
SMARTSM003550.12112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637112139IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-6112131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SMARTSM00355170160192IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.9E-5178217No hitNo description
Gene3DG3DSA:3.30.160.606.9E-4183217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355110197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQTHCFSYLS STYHSFCNLE TDEDDYSTVL SLCPPGQNHQ KYNHSFSMYK QNQDQQNPKG  60
ENGVTVALHI GQPSSSSPVA MADKSTNETL GVGIQQYWIP TPAQILVGPT QFSCSICNKA  120
FNRYNNMQMH MWGHGSEFRK GPESLRGTKP ASPFPRMPCY CCAEGCKNNI DHPRSKPLKD  180
FRTLQTHYKR KHGTKPFRCR KCAKPFAVRG DWRTHEKNCG KLWFCICGSD FKHKRSLKDH  240
VRAFGEGHAA HSKNLYPYDQ VDVEEFEEEE EEDEHGEEFR IFECIGNGGF GGLC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077223.11e-146zinc finger protein WIP6
SwissprotQ9FX681e-115ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2Z7B8E00.0A0A2Z7B8E0_9LAMI; Uncharacterized protein
STRINGVIT_01s0011g03100.t011e-123(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-118C2H2-like zinc finger protein