PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30399.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 543aa    MW: 60461.9 Da    PI: 5.2058
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30399.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-183986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l
       KZV30399.1 39 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 86
                     79******************************************9986 PP
2Myb_DNA-binding47.83.3e-1592135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+  ++++++++G++ W++ a++++ gRt++++k++w++
       KZV30399.1  92 KGAFSPEEERHIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 135
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5813486IPR017930Myb domain
SuperFamilySSF466898.24E-3037133IPR009057Homeodomain-like
SMARTSM007171.7E-133888IPR001005SANT/Myb domain
PfamPF002494.1E-153986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-244093IPR009057Homeodomain-like
CDDcd001675.23E-114186No hitNo description
PROSITE profilePS5129424.74287141IPR017930Myb domain
SMARTSM007177.4E-1591139IPR001005SANT/Myb domain
PfamPF002491.8E-1492135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2594140IPR009057Homeodomain-like
CDDcd001679.63E-1194135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSMTSDSEEW MNSKNGTDSP TVDDNSSSGN MGANGPLKKG PWTSAEDAIL VEYVTKHGEG  60
NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFSPEEE RHIIELHAKM GNKWARMAAE  120
LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DICFQASNEN GQNEEMTAFS SGDSHHPDYL  180
PINHFEFPHV EFKTMELDQL QYPTTFLDLP SEGLLDVPAN SFLPQGPNSS YPQKYLLSTV  240
YPSKKFRGAE SLFPGLDSAV GNTTLDENQY QTDSSIQISQ SFVFPSSFDH TSTPDHASSS  300
SALAGAHVVL NSNTSSSEPT WAMKLELPSL QTHTGSWGSS SSPLPSLESV DTLIQTLPHE  360
NPHSCTLSPR DSGLLDAVLY ESHSMKNSRN TSFHQTSNAS IMSVHDMMDT LSHDIHETEW  420
EAIAEPISPL CHSSSSIFSE CTRISRNSFD DLHSSETFPV KDEAVDDLIQ MKHHNLTEVK  480
SQMVFSTPDF LLASDFFIPK KDQSNNHYLL KDALGTLLCD DLSKDWKQID KSDSCSWNAM  540
PTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31371405107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30399.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080497.10.0transcription factor GAMYB-like isoform X1
TrEMBLA0A2Z7BE960.0A0A2Z7BE96_9LAMI; Transcription factor GAMYB-like
STRINGSolyc06g073640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.37e-87myb domain protein 33