PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV30139.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | NAC | ||||||||
Protein Properties | Length: 473aa MW: 53597 Da PI: 5.0122 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.8 | 4.5e-32 | 81 | 220 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd..iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 lp G++F+P+d+e++ + L+k ++ ++++ i + d i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++t KZV30139.1 81 LPSGVKFDPSDQEIMLHLLAKV-GVDNmkqhpfIDEFIPIVDEDdgICYTHPQNLP-GVKQDGRVSHFFHRAIKAYNTGTRKRRKIHgddlgDVRWHKT 177 699************7777665.33332355554444444444235**********.777888999******************86555655889**** PP NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 g++k+v+ +g ++g+kk++v+y r k+ekt+Wvmh+y+l KZV30139.1 178 GRTKPVFL-DGIQKGCKKIMVLYisPVRGGKAEKTNWVMHQYHL 220 ********.99************6545888899*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-37 | 67 | 239 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.381 | 81 | 239 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-13 | 82 | 220 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MHRKPSFCSY WCLESSWFLY LLYLCRTSWL VDPNRIATKI RSASGRCDPL KVNWSSNPTK 60 SCPNCQFTID NSDVAHEWPG LPSGVKFDPS DQEIMLHLLA KVGVDNMKQH PFIDEFIPIV 120 DEDDGICYTH PQNLPGVKQD GRVSHFFHRA IKAYNTGTRK RRKIHGDDLG DVRWHKTGRT 180 KPVFLDGIQK GCKKIMVLYI SPVRGGKAEK TNWVMHQYHL GTGEDERDGE YVISKVFYQQ 240 QQGKQSEKIE DDVSEGIDAM ITKVDPVTPK SVTPEPPCAG RRLSSHEPEQ DCTLPAAQLY 300 GVHMLEAVET PEPSSDQIHN TMEIQTDQLG NEDDEAAAED KWWENESQFL LSSQQLVEGL 360 SLCDELLQSQ SPNRDENVDV QAPNDKPRLS DYARLGPEHL KRDLEACQAF VPPPANVELD 420 TPPHFRFSQT LVHDPANIEL DTPPDFRLSQ LEFESQESYI AWGGSLRGGK TID |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV30139.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077291.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-163 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2Z7BDI7 | 0.0 | A0A2Z7BDI7_9LAMI; NAC domain-containing protein 8-like | ||||
STRING | PGSC0003DMT400002122 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-165 | NAC family protein |