PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV29560.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 292aa    MW: 33348.3 Da    PI: 6.3444
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV29560.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
       KZV29560.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLSRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding44.14.7e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E+  ++++ ++lG++ W++Ia +++  Rt++++k++w+++l
       KZV29560.1  67 RGNFTSHEEGMIIHLQALLGNK-WAAIATYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.565965IPR017930Myb domain
SuperFamilySSF466891.05E-3011108IPR009057Homeodomain-like
SMARTSM007174.0E-151363IPR001005SANT/Myb domain
PfamPF002491.7E-161461IPR001005SANT/Myb domain
CDDcd001678.70E-121661No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2465116IPR009057Homeodomain-like
SMARTSM007175.3E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129418.16666116IPR017930Myb domain
PfamPF002493.9E-1267112IPR001005SANT/Myb domain
CDDcd001671.56E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLSRCS KSCRLRWTNY  60
LRPGIKRGNF TSHEEGMIIH LQALLGNKWA AIATYLPQRT DNDIKNYWNT HLKKKLMKFQ  120
TGMGHSQMLS DSTASYPQFM SESCGDQRRM DHNIIRDQHF SSNEKNSSLV YASSADNISR  180
LLQEWMGSSP QTNHISYDAD KLQTEASFQG FRPPQIGHYD QVKNVGIPSD DSELNLSSDH  240
LDCDYSQKGY ENIGFLDNQK SPKFENFDQP PFSFLENWLS DEGVEEVIPI MF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-24141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV29560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069952.11e-112myb-related protein 306
SwissprotB3VTV73e-99MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A2G9GS211e-113A0A2G9GS21_9LAMI; Transcription factor, Myb superfamily
STRINGXP_007161907.11e-100(Phaseolus vulgaris)
STRINGXP_010246153.11e-101(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.15e-94myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]