PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV29365.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 29041.6 Da PI: 5.5683 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.3 | 5.8e-08 | 145 | 189 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ ++L +l+P +K++ ae+ A +YIk Lq KZV29365.1 145 SIAARQRRRKITDKTQQLGKLIPGG-----QKMNTAEMFGAAHKYIKFLQ 189 6788*******************86.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.589 | 139 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-11 | 142 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-10 | 142 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.79E-9 | 142 | 192 | No hit | No description |
SMART | SM00353 | 1.3E-9 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 145 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MALSNYSYWD TFHQFNAETT VFAQTEANEQ LPSELQGCSD YLDFGDYVYS CNSTTDHLFN 60 QHSMFYSSEI NYDYLLPGHF QEVLPKRQKL AACGFQEYSL EVPVPPLPEY PPLMAPPVYR 120 SYATCDGGGV KRQPATSGGS LSAQSIAARQ RRRKITDKTQ QLGKLIPGGQ KMNTAEMFGA 180 AHKYIKFLQA QVGILEFAVK SYDHQENKAS SFPEEEEQHY LHGLLESPLI QEKLFSAEKC 240 LVPKTFVQSL NIDYQSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV29365.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022893750.1 | 3e-57 | transcription factor bHLH52-like | ||||
Refseq | XP_022893751.1 | 3e-57 | transcription factor bHLH52-like | ||||
TrEMBL | A0A2Z7B6F9 | 0.0 | A0A2Z7B6F9_9LAMI; Basic helix-loop-helix family protein | ||||
STRING | Migut.H01308.1.p | 2e-45 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3856 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 2e-21 | bHLH family protein |