PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV29207.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

SRS

Protein Properties

Length: 355aa MW: 37290.1 Da PI: 6.6127

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV29207.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220.7	3.2e-68	129	280	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkel 100 g++sCqdCGnqakkdCa++RCRtCCksrgf+C+thvkstWvpaakrrerqqql+ ++++++ ++ +e+ + ++++++ +++ +l++t ++ +++ + l KZV29207.1 129 GGGISCQDCGNQAKKDCAYMRCRTCCKSRGFSCQTHVKSTWVPAAKRRERQQQLSGLQQNSNDQEnRESITGKRQRENPSASITLACTGVVPTTT-SGL 226 5789*************************************************9999887776344445444445688888888988877765.589 PP DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e +lP+ev s+avfrcv+vs++dd+e+++aYqt v+i+GhvfkGiLydqG+e+ KZV29207.1 227 ELGNLPSEVTSQAVFRCVKVSAIDDAEDHYAYQTEVNISGHVFKGILYDQGTES 280 999**********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.5E-65	131	279	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.5E-27	133	175	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.6E-26	231	277	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MAGFFSLGGG GGGGEGRRGG SGGVGGGSGN PDQENTSHNN PPSEINPESW FLFRNEEIQY 60 KGFELWQPQP PQHPHQAENF LQRGGIGNPL QDLYASAGGL AVGPSRGSGF NILDESPRSG 120 FLMMKSSGGG GISCQDCGNQ AKKDCAYMRC RTCCKSRGFS CQTHVKSTWV PAAKRRERQQ 180 QLSGLQQNSN DQENRESITG KRQRENPSAS ITLACTGVVP TTTSGLELGN LPSEVTSQAV 240 FRCVKVSAID DAEDHYAYQT EVNISGHVFK GILYDQGTES HYMAAGETSS GGGSVSAGVQ 300 QLNLITGTSA TATSAATTSA ALGGSSASLF LDPSLYPAPI NSFMAGTQFF PPPRS

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MAGFFSLGGG GGGGEGRRGG SGGVGGGSGN PDQENTSHNN PPSEINPESW FLFRNEEIQY  60
KGFELWQPQP PQHPHQAENF LQRGGIGNPL QDLYASAGGL AVGPSRGSGF NILDESPRSG  120
FLMMKSSGGG GISCQDCGNQ AKKDCAYMRC RTCCKSRGFS CQTHVKSTWV PAAKRRERQQ  180
QLSGLQQNSN DQENRESITG KRQRENPSAS ITLACTGVVP TTTSGLELGN LPSEVTSQAV  240
FRCVKVSAID DAEDHYAYQT EVNISGHVFK GILYDQGTES HYMAAGETSS GGGSVSAGVQ  300
QLNLITGTSA TATSAATTSA ALGGSSASLF LDPSLYPAPI NSFMAGTQFF PPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV29207.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100954.1	1e-159	protein SHORT INTERNODES
Swissprot	K4B6C9	4e-95	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A2Z7B6J4	0.0	A0A2Z7B6J4_9LAMI; Lateral root primordium protein-related
STRING	Migut.L00031.1.p	1e-120	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	7e-72	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]