PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28896.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 124aa    MW: 13472.5 Da    PI: 5.6683
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28896.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.82e-13377787
                .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                ps+v+   +l l+ +  ++  ++ +++  + l de+g++W v +  rk++    l++GWk+F+ +++L +gD +vF+l++ 
  KZV28896.1  3 PSHVSGGFWLGLSSDLSKRK-LP-RNDGVVLLIDEEGEEWPVIYLARKSG----LSGGWKKFAVDHHLVDGDALVFQLIRP 77
                66777777777666665443.33.3344799*************666666....9**********************9973 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.67E-19187IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-16186IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.619188IPR003340B3 DNA binding domain
SMARTSM010199.6E-15188IPR003340B3 DNA binding domain
CDDcd100173.17E-21186No hitNo description
PfamPF023621.1E-10278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MLPSHVSGGF WLGLSSDLSK RKLPRNDGVV LLIDEEGEEW PVIYLARKSG LSGGWKKFAV  60
DHHLVDGDAL VFQLIRPAVL KVFIIRVESS EKIAKAADTT IDGVESSEKI AKAADTTIDG  120
QTLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879866.19e-55B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ42e-32Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A2Z7BAF64e-83A0A2Z7BAF6_9LAMI; Uncharacterized protein
STRINGMigut.C00592.1.p3e-47(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.17e-35B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]