PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28889.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 331aa    MW: 37309.3 Da    PI: 5.7683
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28889.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-27958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++  +s
  KZV28889.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSIFS 58
                68*******************************************98776 PP
2K-box142.2e-061181751471
       K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                 +++ qqe+ k + ++e +++ +R + G+  +  +l e +  eq Le+ lk++R +K+ 
  KZV28889.1 118 MQEIQQEILKCRCQLEDMEKRLRMYEGDTSDITTLCEAEYREQILEENLKNVRVRKHV 175
                 799************************98888888888899**************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.338161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-30281IPR002100Transcription factor, MADS-box
CDDcd002652.19E-38275No hitNo description
PRINTSPR004043.3E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.7E-261055IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSIFSGN  60
RSIEEIISRY VNLPEHERGS SPASVIDSHV EISFLAIIST STAVLYLNLA NNGRVELMQE  120
IQQEILKCRC QLEDMEKRLR MYEGDTSDIT TLCEAEYREQ ILEENLKNVR VRKHVLQDQY  180
IPPGPGVQTT SQVNFPTEAL NINGLAARNP NGGLDWLPQR DPQVQILNFL DSNGLLPISD  240
HQSQHMDNIL PSSLTLVHAP SLHVHNHLNP TRRISEDDTQ QPEFGLDVNL SPWADLYPAA  300
GTDPFPTAQP RERAILEVFL SQLTPVHHDP V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-16188187Myocyte-specific enhancer factor 2B
1tqe_Q4e-16188187Myocyte-specific enhancer factor 2B
1tqe_R4e-16188187Myocyte-specific enhancer factor 2B
1tqe_S4e-16188187Myocyte-specific enhancer factor 2B
5f28_A6e-16188187MEF2C
5f28_B6e-16188187MEF2C
5f28_C6e-16188187MEF2C
5f28_D6e-16188187MEF2C
6byy_A5e-16188187MEF2 CHIMERA
6byy_B5e-16188187MEF2 CHIMERA
6byy_C5e-16188187MEF2 CHIMERA
6byy_D5e-16188187MEF2 CHIMERA
6bz1_A6e-16188187MEF2 CHIMERA
6bz1_B6e-16188187MEF2 CHIMERA
6c9l_A4e-16188187Myocyte-specific enhancer factor 2B
6c9l_B4e-16188187Myocyte-specific enhancer factor 2B
6c9l_C4e-16188187Myocyte-specific enhancer factor 2B
6c9l_D4e-16188187Myocyte-specific enhancer factor 2B
6c9l_E4e-16188187Myocyte-specific enhancer factor 2B
6c9l_F4e-16188187Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069761.11e-160agamous-like MADS-box protein AGL104 isoform X1
TrEMBLA0A2Z7BAQ90.0A0A2Z7BAQ9_9LAMI; MADS-box transcription factor 3
STRINGMigut.C00517.1.p1e-146(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61831925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-44AGAMOUS-like 104