PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV28806.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 618aa MW: 70774.9 Da PI: 6.569

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV28806.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367	2.5e-112	243	614	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cAea s + ++ +++L+++++ +s++gd+++Rla++f +AL+ar+a+++s l+ a+++++ + se l+++++++ +P+ ++s++ aN KZV28806.1 243 LRNLLTRCAEAASIFNITAGEEILKQIRQYSSSYGDANERLAHCFGNALEARMAGTGSALSTAFAARRIP---ASELLKSYQTYVASCPFKRMSNIYAN 338 689*********************************************************99999999...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 + I + + +++r+HiiDf+is+G+QWp+L+q + Rp+g+p+l+iTg++ p++g +e++e+tg+rL +++++++vpfe+n+ +ak++ed+ +e+L++ KZV28806.1 339 KSIGRYTRQASRIHIIDFGISYGFQWPCLIQGVSLRPGGAPRLKITGIDFPQPGfkPAERVEQTGRRLMNYCKRFDVPFEYNA-IAKKWEDVCPEDLKI 436 *************************************************999***********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 ++ E+++Vn+ ++lh+++desv ++s rd vLkl+k++sP+++v+ + +n++ F +rf e l++ys+ fd+lea++pre+++r ++Ere+lgre+ KZV28806.1 437 ERYETVVVNCLYRLHHVPDESVGVNSLRDCVLKLIKKISPDLFVHGVINGTYNAPFFTTRFREGLNHYSSYFDMLEATIPREDQDRLMYEREVLGREVL 535 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nvvaceg er+er et+++W+ r +aGF+++pl+ + k++++ + + ++vee+s+++++gWk+r ++++S+W+ KZV28806.1 536 NVVACEGMERVERPETYRQWHVRNLRAGFRQLPLNRELLKEVRTKVCDGYHINFSVEEDSEWMLQGWKGRVMYALSCWK 614 ****************************************998888677***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.808	217	594	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.8E-110	243	614	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MSAGRYPLNG LQFNQSNLIN ECNYDRGFLK GADADGESPV ECDYFSGVFD YIKQMLMEED 60 DLQDMWQEDY YALQAAEKYF HEALLSDKDP HESFCDLRGS LNPPFLLENS SALTASRESG 120 ASNIQIDISS NLDLGPKQTN LTNEDSFKKK NHSRVESDDC AEGRSSKQAA GFAYEEEQTE 180 KYDKSLLCRG MGPTFYRECV CHCEGSLDAQ DESLRLFRKS KEVRRGRPKG SKNHGRSREV 240 VDLRNLLTRC AEAASIFNIT AGEEILKQIR QYSSSYGDAN ERLAHCFGNA LEARMAGTGS 300 ALSTAFAARR IPASELLKSY QTYVASCPFK RMSNIYANKS IGRYTRQASR IHIIDFGISY 360 GFQWPCLIQG VSLRPGGAPR LKITGIDFPQ PGFKPAERVE QTGRRLMNYC KRFDVPFEYN 420 AIAKKWEDVC PEDLKIERYE TVVVNCLYRL HHVPDESVGV NSLRDCVLKL IKKISPDLFV 480 HGVINGTYNA PFFTTRFREG LNHYSSYFDM LEATIPREDQ DRLMYEREVL GREVLNVVAC 540 EGMERVERPE TYRQWHVRNL RAGFRQLPLN RELLKEVRTK VCDGYHINFS VEEDSEWMLQ 600 GWKGRVMYAL SCWKPIQE

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MSAGRYPLNG LQFNQSNLIN ECNYDRGFLK GADADGESPV ECDYFSGVFD YIKQMLMEED  60
DLQDMWQEDY YALQAAEKYF HEALLSDKDP HESFCDLRGS LNPPFLLENS SALTASRESG  120
ASNIQIDISS NLDLGPKQTN LTNEDSFKKK NHSRVESDDC AEGRSSKQAA GFAYEEEQTE  180
KYDKSLLCRG MGPTFYRECV CHCEGSLDAQ DESLRLFRKS KEVRRGRPKG SKNHGRSREV  240
VDLRNLLTRC AEAASIFNIT AGEEILKQIR QYSSSYGDAN ERLAHCFGNA LEARMAGTGS  300
ALSTAFAARR IPASELLKSY QTYVASCPFK RMSNIYANKS IGRYTRQASR IHIIDFGISY  360
GFQWPCLIQG VSLRPGGAPR LKITGIDFPQ PGFKPAERVE QTGRRLMNYC KRFDVPFEYN  420
AIAKKWEDVC PEDLKIERYE TVVVNCLYRL HHVPDESVGV NSLRDCVLKL IKKISPDLFV  480
HGVINGTYNA PFFTTRFREG LNHYSSYFDM LEATIPREDQ DRLMYEREVL GREVLNVVAC  540
EGMERVERPE TYRQWHVRNL RAGFRQLPLN RELLKEVRTK VCDGYHINFS VEEDSEWMLQ  600
GWKGRVMYAL SCWKPIQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-49	243	614	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV28806.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022874865.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	1e-173	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2Z7BA61	0.0	A0A2Z7BA61_9LAMI; Scarecrow-like protein 9
STRING	Migut.D02077.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-175	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]