PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV28805.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 665aa MW: 75116.8 Da PI: 5.1549

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV28805.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	368.1	1.2e-112	291	662	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+ v+s+d + a + L+++++++s++gd qRla++f+ +L+arla++++ely++l ++ + +e+l+a++++ ++sP+ k + ++aN KZV28805.1 291 LRTLLISCAQSVASDDRRTAYEQLKQIKNNSSKTGDVYQRLATVFASGLEARLAGTGTELYASLVRKKIT---AAEKLKAYQVYLQASPFKKTCIILAN 386 6789**********************************************************999998...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++I +++++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p++g ++ +eetg+rL+k++e++gvpfe+++++ +++e++++e+L++ KZV28805.1 387 KMIGLMASEANTLHIVDFGILYGFQWPILIQHLSQRPGGPPKLRITGIEFPQPGfrPEQLIEETGSRLKKYCERFGVPFEYQAIALQNWEAVKIEDLKI 485 **************************************************999999************************************* PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 ++gE+laVn+ ++l rllde+v +s+rd+vL+l++sl+P+++v ++ +++s+ F++rf eal +ysalfd+++++lpr++ eri+ E+ + grei KZV28805.1 486 RSGEVLAVNSLFRLGRLLDETVVDDSPRDAVLNLIRSLKPNIFVNGVSNGSYSSPFFVTRFKEALFHYSALFDMFDSTLPRDNPERINFEQDFSGREII 584 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 n++acegaer+er et+++W+ r ++aGFk++pl+++++k+ k+ ++ + + + +e+ +++++gWk+r ++++S+W KZV28805.1 585 NAIACEGAERVERPETYKQWQVRYGRAGFKQLPLNQEIMKKLKHKVAAGYHKDFLCDEDGNWMLQGWKGRIMYAISCW 662 ******************************************9999888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.443	265	643	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.2E-110	291	662	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MEYQFNGLND PINGLKFDDE DFLSTGEQSA APFNGLKHGS LDLDVLDIPF LPLSPDSLDF 60 TPSSTASYEA ESPDDQNSDP VIKFLNQILI EEKSYLPDSL SNSSIQVGSH LSYSTLDGFN 120 DNANFQVNLS GRTGIFPNMI TDSESILQFK RGREEASKFL PTENQLIIDL EQYELPNKTE 180 IISLDAVVKE EEDRTEQFNN GSRGRKHHQR EDSDSENVER SRKQAANYKE DVELSDMFDR 240 VLLFRDACCD ANADLPTPMT TTVQQALLPS GSTGGRTRAK KNEKKRETVD LRTLLISCAQ 300 SVASDDRRTA YEQLKQIKNN SSKTGDVYQR LATVFASGLE ARLAGTGTEL YASLVRKKIT 360 AAEKLKAYQV YLQASPFKKT CIILANKMIG LMASEANTLH IVDFGILYGF QWPILIQHLS 420 QRPGGPPKLR ITGIEFPQPG FRPEQLIEET GSRLKKYCER FGVPFEYQAI ALQNWEAVKI 480 EDLKIRSGEV LAVNSLFRLG RLLDETVVDD SPRDAVLNLI RSLKPNIFVN GVSNGSYSSP 540 FFVTRFKEAL FHYSALFDMF DSTLPRDNPE RINFEQDFSG REIINAIACE GAERVERPET 600 YKQWQVRYGR AGFKQLPLNQ EIMKKLKHKV AAGYHKDFLC DEDGNWMLQG WKGRIMYAIS 660 CWIPA

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MEYQFNGLND PINGLKFDDE DFLSTGEQSA APFNGLKHGS LDLDVLDIPF LPLSPDSLDF  60
TPSSTASYEA ESPDDQNSDP VIKFLNQILI EEKSYLPDSL SNSSIQVGSH LSYSTLDGFN  120
DNANFQVNLS GRTGIFPNMI TDSESILQFK RGREEASKFL PTENQLIIDL EQYELPNKTE  180
IISLDAVVKE EEDRTEQFNN GSRGRKHHQR EDSDSENVER SRKQAANYKE DVELSDMFDR  240
VLLFRDACCD ANADLPTPMT TTVQQALLPS GSTGGRTRAK KNEKKRETVD LRTLLISCAQ  300
SVASDDRRTA YEQLKQIKNN SSKTGDVYQR LATVFASGLE ARLAGTGTEL YASLVRKKIT  360
AAEKLKAYQV YLQASPFKKT CIILANKMIG LMASEANTLH IVDFGILYGF QWPILIQHLS  420
QRPGGPPKLR ITGIEFPQPG FRPEQLIEET GSRLKKYCER FGVPFEYQAI ALQNWEAVKI  480
EDLKIRSGEV LAVNSLFRLG RLLDETVVDD SPRDAVLNLI RSLKPNIFVN GVSNGSYSSP  540
FFVTRFKEAL FHYSALFDMF DSTLPRDNPE RINFEQDFSG REIINAIACE GAERVERPET  600
YKQWQVRYGR AGFKQLPLNQ EIMKKLKHKV AAGYHKDFLC DEDGNWMLQG WKGRIMYAIS  660
CWIPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-45	295	662	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV28805.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012827889.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2Z7B4U3	0.0	A0A2Z7B4U3_9LAMI; Scarecrow-like protein 14-like
STRING	Migut.D02079.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]