PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV28649.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 680aa MW: 77208.1 Da PI: 6.2483

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV28649.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	380.2	2.5e-116	305	676	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+avss ++ aq+lL ++++++sp+gd+++Rla++f++AL+ar a+++s ly a+++++t+ se l+++++++ ++P+ ++s++ aN KZV28649.1 305 LRTLLTRCATAVSSFNTGTAQELLMKIRQHSSPYGDANERLAHCFANALEARAASTGSMLYTAISSKRTT---ASELLKSYRTYVTACPFKRMSNVFAN 400 5789**********************************************************999999...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 + I + +++++HiiDf+i +G+QWp+++q L+ Rp+gpp l+iTg++ p++g +e++e+tg+rL +++++++vpfe+n vak+++++++e+L++ KZV28649.1 401 KSIAGYTLESDKIHIIDFGILYGFQWPCIIQGLSLRPGGPPFLKITGIDFPQPGfkPAERVEQTGRRLMSYCKRFKVPFEYNG-VAKKWDEIRMEDLKI 498 *************************************************999***********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +++E+l+ n+ ++l +++des+ ++s+rd++Lk++k+++P ++v+ + +n++ F+ rf eal +ys++fd+lea++pre+++r +Ere++gre++ KZV28649.1 499 ERDEMLVANCLYRLRHVPDESAGVNSPRDAILKFIKKMKPALFVHGVVNGTYNTPFFASRFKEALFHYSSIFDMLEATIPREDQDRLLYEREVFGREVM 597 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nvvace+aer+er e++++W+ r ++aGF+p+pl+ + + ++k+ +rk + + ++vee+s+++++gWk+r ++++S+W+ KZV28649.1 598 NVVACEEAERVERPESYKQWHVRNHRAGFRPIPLNPDLMREIKTKVRKGYHNDFMVEEDSEWMLQGWKGRVMYALSCWK 676 **********************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.467	279	656	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.5E-114	305	676	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MGTLSRCHID SVNENRGFPE ILLQAPSNHP WSNLNPCQGI QASSHDAVGG NTTCEGDVPV 60 ACDYFDGVYE YIKQMLMEED DLEHRPCMFQ DCSALQAAEK YFYDALSNKD LEPNDSNSGP 120 PPYGVDNNHP LEIVDLENLE FGAPASGFGQ WSFIDQQICG EGLVIRDGVL DSSSLSPFQP 180 QIKNSINLDR GLSDINVEDP QSRKKHGRGH DSGDHVEGRS SKQIASCEDD NDAMDQYDKA 240 FLCHQMNPGF YDKPRVSKYE ETSEDEVDTK YSKKPELRRG RPKGSTKNKP SQVAKPNPVK 300 EAVDLRTLLT RCATAVSSFN TGTAQELLMK IRQHSSPYGD ANERLAHCFA NALEARAAST 360 GSMLYTAISS KRTTASELLK SYRTYVTACP FKRMSNVFAN KSIAGYTLES DKIHIIDFGI 420 LYGFQWPCII QGLSLRPGGP PFLKITGIDF PQPGFKPAER VEQTGRRLMS YCKRFKVPFE 480 YNGVAKKWDE IRMEDLKIER DEMLVANCLY RLRHVPDESA GVNSPRDAIL KFIKKMKPAL 540 FVHGVVNGTY NTPFFASRFK EALFHYSSIF DMLEATIPRE DQDRLLYERE VFGREVMNVV 600 ACEEAERVER PESYKQWHVR NHRAGFRPIP LNPDLMREIK TKVRKGYHND FMVEEDSEWM 660 LQGWKGRVMY ALSCWKPYED

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MGTLSRCHID SVNENRGFPE ILLQAPSNHP WSNLNPCQGI QASSHDAVGG NTTCEGDVPV  60
ACDYFDGVYE YIKQMLMEED DLEHRPCMFQ DCSALQAAEK YFYDALSNKD LEPNDSNSGP  120
PPYGVDNNHP LEIVDLENLE FGAPASGFGQ WSFIDQQICG EGLVIRDGVL DSSSLSPFQP  180
QIKNSINLDR GLSDINVEDP QSRKKHGRGH DSGDHVEGRS SKQIASCEDD NDAMDQYDKA  240
FLCHQMNPGF YDKPRVSKYE ETSEDEVDTK YSKKPELRRG RPKGSTKNKP SQVAKPNPVK  300
EAVDLRTLLT RCATAVSSFN TGTAQELLMK IRQHSSPYGD ANERLAHCFA NALEARAAST  360
GSMLYTAISS KRTTASELLK SYRTYVTACP FKRMSNVFAN KSIAGYTLES DKIHIIDFGI  420
LYGFQWPCII QGLSLRPGGP PFLKITGIDF PQPGFKPAER VEQTGRRLMS YCKRFKVPFE  480
YNGVAKKWDE IRMEDLKIER DEMLVANCLY RLRHVPDESA GVNSPRDAIL KFIKKMKPAL  540
FVHGVVNGTY NTPFFASRFK EALFHYSSIF DMLEATIPRE DQDRLLYERE VFGREVMNVV  600
ACEEAERVER PESYKQWHVR NHRAGFRPIP LNPDLMREIK TKVRKGYHND FMVEEDSEWM  660
LQGWKGRVMY ALSCWKPYED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-51	305	676	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV28649.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089501.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	1e-166	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2Z7BA48	0.0	A0A2Z7BA48_9LAMI; Scarecrow-like protein 9
STRING	Migut.D02077.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-156	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]