PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28501.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 95aa    MW: 10723.1 Da    PI: 10.5787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28501.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.19.9e-0624631854
                HHHHHHHCTSCC.C.....TTS-STCHHHHHHHHHHHHHH CS
         HLH 18 safeeLrellPk.as..kapskKlsKaeiLekAveYIksL 54
                +  ++L +llP+ +   + +s K s   +L+++++YI+sL
  KZV28501.1 24 ELVSKLHQLLPEiNRgrGRRSNKASANKVLQETCNYIRSL 63
                55689*******77455445555555569*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.153663IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-72179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-72482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSNRRSRAHQ SSGSSRISDD QIIELVSKLH QLLPEINRGR GRRSNKASAN KVLQETCNYI  60
RSLHREVDNL SDRLSQLLST IDAESPEAAI IRTLI
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28501.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357115.14e-45PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX15e-41PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2Z7B2D72e-60A0A2Z7B2D7_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000177482e-44(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-43bHLH family protein