PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV28446.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

Trihelix

Protein Properties

Length: 502aa MW: 57362.7 Da PI: 6.8721

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV28446.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.2	5.2e-29	61	146	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+++r+++++ ++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++++qlea KZV28446.1 61 RWPRQETLTLLDIRSRLDSMFKEANQKGPLWDEVSRIMyEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFYRQLEA 146 8***********************************99**************************98..55667*****85 PP
2	trihelix	48.1	3.1e-15	360	435	2	80
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W++ e++ Li++r+ e +++ g +++ lW+evs km+ g ers +Ckekw++ln++ ++++ +k+ s+ c+ KZV28446.1 360 WPEPEIRRLIQLRTGNEAKFQHsGISEEVLWDEVSHKMAWFGHERSGLMCKEKWDSLNNYVPQCNKKRKED----SKGCS 435 *******************735699***********************************9999985....33343 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	7.8	58	121	IPR001005	SANT/Myb domain
Pfam	PF13837	9.8E-20	60	147	No hit	No description
CDD	cd12203	3.87E-20	61	126	No hit	No description
PROSITE profile	PS50090	6.667	61	119	IPR017877	Myb-like domain
SMART	SM00717	1.5	356	419	IPR001005	SANT/Myb domain
Pfam	PF13837	1.7E-11	358	436	No hit	No description
PROSITE profile	PS50090	6.144	360	417	IPR017877	Myb-like domain
CDD	cd12203	2.65E-17	360	419	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0010200	Biological Process	response to chitin
GO:0046621	Biological Process	negative regulation of organ growth
GO:0048442	Biological Process	sepal development
GO:0048498	Biological Process	establishment of petal orientation
GO:0090428	Biological Process	perianth development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MFVVPRGLHR EFCSDSTNSA GVDMAHNSAA VAATTLSGGF SVFEMESAGG QSGGGDSGTV 60 RWPRQETLTL LDIRSRLDSM FKEANQKGPL WDEVSRIMYE EHGYQRSGKK CREKFENLYK 120 YYKKTKEGKA GRQDGKHYRF YRQLEALCGE TTNLSSTSET HFNGGSFQYS CKNKNTFVAD 180 NQVSYPGLKL SDTTLGLSNS SDPDTSLSDD TDTNLGINDD DNLDKQKMKK RKGRRSWKAK 240 IRDFIDSQMK KLMDKQESLM EKMMRNIEHK EHERMIREEE WRKQDAERIE REHKFWASER 300 AWMEARDNTL MDALQKLTAN ELRAASVRED FVAPEIRSLS ENQNDDGSET MTNSSKGDVW 360 PEPEIRRLIQ LRTGNEAKFQ HSGISEEVLW DEVSHKMAWF GHERSGLMCK EKWDSLNNYV 420 PQCNKKRKED SKGCSYDHLN NASVCNRGGR CSETKEQGIN YHGPRIHNPD NASPYCNGNG 480 GDTGSDVCFR YFMGDGLGRI MD

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MFVVPRGLHR EFCSDSTNSA GVDMAHNSAA VAATTLSGGF SVFEMESAGG QSGGGDSGTV  60
RWPRQETLTL LDIRSRLDSM FKEANQKGPL WDEVSRIMYE EHGYQRSGKK CREKFENLYK  120
YYKKTKEGKA GRQDGKHYRF YRQLEALCGE TTNLSSTSET HFNGGSFQYS CKNKNTFVAD  180
NQVSYPGLKL SDTTLGLSNS SDPDTSLSDD TDTNLGINDD DNLDKQKMKK RKGRRSWKAK  240
IRDFIDSQMK KLMDKQESLM EKMMRNIEHK EHERMIREEE WRKQDAERIE REHKFWASER  300
AWMEARDNTL MDALQKLTAN ELRAASVRED FVAPEIRSLS ENQNDDGSET MTNSSKGDVW  360
PEPEIRRLIQ LRTGNEAKFQ HSGISEEVLW DEVSHKMAWF GHERSGLMCK EKWDSLNNYV  420
PQCNKKRKED SKGCSYDHLN NASVCNRGGR CSETKEQGIN YHGPRIHNPD NASPYCNGNG  480
GDTGSDVCFR YFMGDGLGRI MD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV28446.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094408.1	0.0	trihelix transcription factor PTL
Swissprot	Q9LZS0	1e-114	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A2Z7B971	0.0	A0A2Z7B971_9LAMI; Trihelix transcription factor PTL
STRING	VIT_08s0007g03820.t01	1e-175	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-112	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]