PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28337.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 22762.9 Da    PI: 8.4879
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28337.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.31e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien+snrqvt+skRrngi+KKA+E+ vLCd +v+viifs++gk++e++s
  KZV28337.1  9 KRIENSSNRQVTYSKRRNGIIKKAKEIAVLCDSQVSVIIFSTSGKMHEFCS 59
                79***********************************************96 PP
2K-box71.72.3e-2471149179
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                 y+k sgk+l++ak+e+l++e++++kke++n+q e+Rhl+Ged+++L++keL+ Le++L ++ +  ++k+ +l l+ +++
  KZV28337.1  71 YHKLSGKRLWDAKHEHLDNEINRIKKENDNMQIELRHLKGEDITTLNYKELMVLEEALTNGTSALKTKQRHLHLDPMDN 149
                 7899*****************************************************************9998877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.847161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-35296IPR002100Transcription factor, MADS-box
CDDcd002655.04E-42280No hitNo description
PRINTSPR004045.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.6E-1383148IPR002487Transcription factor, K-box
PROSITE profilePS5129710.14584178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEIAVLCD SQVSVIIFST SGKMHEFCSP  60
AITLSDILEQ YHKLSGKRLW DAKHEHLDNE INRIKKENDN MQIELRHLKG EDITTLNYKE  120
LMVLEEALTN GTSALKTKQR HLHLDPMDNG GNHVMESHGQ GMYDTQAGVA NYQACHSQMP  180
PPPFAFRLQP MQPNLQDHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-16175173MEF2 CHIMERA
6byy_B9e-16175173MEF2 CHIMERA
6byy_C9e-16175173MEF2 CHIMERA
6byy_D9e-16175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28337.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081947.11e-105floral homeotic protein GLOBOSA
SwissprotQ033781e-100GLOB_ANTMA; Floral homeotic protein GLOBOSA
TrEMBLA0A2Z7B4701e-149A0A2Z7B470_9LAMI; Floral homeotic protein PMADS 2
STRINGMigut.A00326.1.p1e-101(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-70MIKC_MADS family protein
Publications ? help Back to Top
  1. Tröbner W, et al.
    GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis.
    EMBO J., 1992. 11(13): p. 4693-704
    [PMID:1361166]
  2. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  3. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]