PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV28191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | SBP | ||||||||
Protein Properties | Length: 386aa MW: 42220.7 Da PI: 8.6277 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.7 | 9.5e-40 | 143 | 220 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+ dls akeyh++h+vCe+hsk+p+v+v g+e+rfCqqCsrfh+l efDe+krsCrrrL++hn+rrrk+q+ KZV28191.1 143 RCQVEDCNLDLSMAKEYHQKHRVCEIHSKCPKVYVGGQERRFCQQCSRFHSLYEFDEKKRSCRRRLSDHNARRRKPQQ 220 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-32 | 138 | 205 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.77 | 141 | 218 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-37 | 142 | 223 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.1E-30 | 144 | 217 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MIVDDGEIGA GSFNLSWGGV NSGASGSEGG QGSSAKSSAS ASTDSSVKDT FRFTKFEWSN 60 GNFSQKMEMK GPEVSGISTT MGASVGSMEP LIGLKLGKRT YFENSVGGGN GKITSLSSMD 120 TRSSNTSTPK KTKASGPNAP IPRCQVEDCN LDLSMAKEYH QKHRVCEIHS KCPKVYVGGQ 180 ERRFCQQCSR FHSLYEFDEK KRSCRRRLSD HNARRRKPQQ ETVRYDSTRI TSPFYGTERR 240 QQVSFLLDNA PFIQPRIPAN SVGDSSEFTI TKGYASKSLG DGDTDEPHSN ATNGFLASKN 300 SISGYSNSGS KIASSHADAA REYHHALSLL SSSNSWGLGE PEAMPLSSPE LWMTGLHQRV 360 PTNNYFQEIP LVKPPYEADF YSNVFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-28 | 144 | 217 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 216 | KKRSCRRRLSDHNARRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV28191.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086806.1 | 1e-146 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_011086808.1 | 1e-146 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_020551644.1 | 1e-146 | squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A2Z7B2Q3 | 0.0 | A0A2Z7B2Q3_9LAMI; Squamosa promoter-binding-like protein 12-like | ||||
STRING | Migut.K00951.1.p | 1e-111 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4129 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 4e-53 | squamosa promoter binding protein-like 10 |