PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV27907.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 356aa    MW: 40649.9 Da    PI: 9.5601
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV27907.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.2e-281059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+ey+s
  KZV27907.1 10 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYAS 59
                69**********************************************86 PP

2K-box52.42.3e-18921721999
       K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  ++++L+ke+ +   ++R++ Ge+L+ Ls++eLqqLe+ Le +l ++ +kK+e +l++i+elq k ++l een++L+++l+
  KZV27907.1  92 SNYSRLNKEVAEKSYQLRRMRGEELQGLSIEELQQLEKSLEAGLVRVMEKKEEKILKEINELQDKGRQLVEENERLKQQLA 172
                 578999999999999***************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.291161IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.57E-38275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-26323IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-31373IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.09587177IPR002487Transcription factor, K-box
PfamPF014861.3E-1592171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAREKIKIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEYASS  60
SMKEILERHN LHSKNLDKLE QPCLELQLVE DSNYSRLNKE VAEKSYQLRR MRGEELQGLS  120
IEELQQLEKS LEAGLVRVME KKEEKILKEI NELQDKGRQL VEENERLKQQ LAKNGVDAKI  180
SKTGTVKGRL SWTGRRYLAE TVRGCPSWNS KSLLPEVQGT SSWLTSLMQK QHEDQAQSKK  240
SSSSAESRAE LKCSTSAVIE CRSDHQWSTR YLTERPAEGP TGRALEQSSY NQDESPKKTS  300
LGNSSIEEFA RYREQIRNQL VKDKPAGQAD QELFQEEGTL SSKVMNSHKM GKNFSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-20169169MEF2C
5f28_B3e-20169169MEF2C
5f28_C3e-20169169MEF2C
5f28_D3e-20169169MEF2C
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV27907.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7B7R40.0A0A2Z7B7R4_9LAMI; MADS-box protein JOINTLESS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-85MIKC_MADS family protein