PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV27907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 356aa MW: 40649.9 Da PI: 9.5601 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.2 | 2.2e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+ey+s KZV27907.1 10 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYAS 59 69**********************************************86 PP | |||||||
2 | K-box | 52.4 | 2.3e-18 | 92 | 172 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++L+ke+ + ++R++ Ge+L+ Ls++eLqqLe+ Le +l ++ +kK+e +l++i+elq k ++l een++L+++l+ KZV27907.1 92 SNYSRLNKEVAEKSYQLRRMRGEELQGLSIEELQQLEKSLEAGLVRVMEKKEEKILKEINELQDKGRQLVEENERLKQQLA 172 578999999999999***************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.291 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.57E-38 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-31 | 3 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.095 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-15 | 92 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MAREKIKIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEYASS 60 SMKEILERHN LHSKNLDKLE QPCLELQLVE DSNYSRLNKE VAEKSYQLRR MRGEELQGLS 120 IEELQQLEKS LEAGLVRVME KKEEKILKEI NELQDKGRQL VEENERLKQQ LAKNGVDAKI 180 SKTGTVKGRL SWTGRRYLAE TVRGCPSWNS KSLLPEVQGT SSWLTSLMQK QHEDQAQSKK 240 SSSSAESRAE LKCSTSAVIE CRSDHQWSTR YLTERPAEGP TGRALEQSSY NQDESPKKTS 300 LGNSSIEEFA RYREQIRNQL VKDKPAGQAD QELFQEEGTL SSKVMNSHKM GKNFSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV27907.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z7B7R4 | 0.0 | A0A2Z7B7R4_9LAMI; MADS-box protein JOINTLESS |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-85 | MIKC_MADS family protein |