PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV27421.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 301aa    MW: 33798.8 Da    PI: 7.4201
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV27421.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.57.4e-42810632129
         NAM  32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                 ++i e+d++k+ePwdLpkk+k++e+ew+fF++rd+ky+tg r+nrat  gyWkatgkd+e+++k +++lvg+kktLvfy+grapkgekt+Wvmheyrle
  KZV27421.1   8 RAIGEADLNKSEPWDLPKKAKTGEREWFFFCQRDRKYPTGMRTNRATVCGYWKATGKDREIKCKsRNSLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 106
                 5799*************9999*****************************************9977788****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.5311130IPR003441NAC domain
SuperFamilySSF1019411.7E-463131IPR003441NAC domain
PfamPF023652.6E-1724105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDGRFAARAI GEADLNKSEP WDLPKKAKTG EREWFFFCQR DRKYPTGMRT NRATVCGYWK  60
ATGKDREIKC KSRNSLVGMK KTLVFYRGRA PKGEKTNWVM HEYRLEGDFS NYNVSKAAKE  120
EWVVCKVFHK NVVAKQARTE STFVDHLLDS PSPTSLPSLA DYSCWNNNQK PDSSFAIDPD  180
HEFPLPNPSA FPYQASSSLG TSSIPSYPTN LPVKSTGVDQ ENLRLLLASK ACKTDRFSGN  240
DSMVSHSQET GLSTEVVNEI TSVVSKGDVE SKIAPIFDDQ ELEGLSFSPN NISDFDSLWS  300
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-38513644171NO APICAL MERISTEM PROTEIN
1ut4_B6e-38513644171NO APICAL MERISTEM PROTEIN
1ut7_A6e-38513644171NO APICAL MERISTEM PROTEIN
1ut7_B6e-38513644171NO APICAL MERISTEM PROTEIN
3swm_A7e-38513647174NAC domain-containing protein 19
3swm_B7e-38513647174NAC domain-containing protein 19
3swm_C7e-38513647174NAC domain-containing protein 19
3swm_D7e-38513647174NAC domain-containing protein 19
3swp_A7e-38513647174NAC domain-containing protein 19
3swp_B7e-38513647174NAC domain-containing protein 19
3swp_C7e-38513647174NAC domain-containing protein 19
3swp_D7e-38513647174NAC domain-containing protein 19
4dul_A6e-38513644171NAC domain-containing protein 19
4dul_B6e-38513644171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV27421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078584.11e-122NAC domain-containing protein 92
SwissprotQ9SQQ63e-75NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A2G9GVZ81e-104A0A2G9GVZ8_9LAMI; Uncharacterized protein
STRINGcassava4.1_010179m4e-91(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.16e-73Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]