PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV27414.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARR-B
Protein Properties Length: 567aa    MW: 62850.7 Da    PI: 6.3694
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV27414.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.21.6e-27202255155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr+ W+ eLH++Fv+av++L G+ekA Pk+il+lm+v+gLt+e+v+SHLQkYRl
  KZV27414.1 202 KPRVIWSIELHRKFVSAVNHL-GIEKAFPKRILDLMGVEGLTRENVASHLQKYRL 255
                 79*******************.********************************8 PP
2Response_reg83.37.4e-28221301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p  ++ll ++l+k +y +v+++++++ al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g++e++ + ++ Ga 
    KZV27414.1  22 VLAVDDDPMCLKLLDTLLRKCQY-HVTATSQARTALKLLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPELVMKGVRHGAC 116
                   799********************.***************888889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+ +eel++
    KZV27414.1 117 DYLVKPVRIEELRN 130
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1611563IPR017053Response regulator B-type, plant
SuperFamilySSF521722.56E-3619143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.2E-4319150No hitNo description
SMARTSM004485.2E-3220132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.29421136IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.8E-2522131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.64E-2823135No hitNo description
Gene3DG3DSA:1.10.10.601.2E-28199260IPR009057Homeodomain-like
PROSITE profilePS5129411.508199258IPR017930Myb domain
SuperFamilySSF466898.6E-19199259IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23202255IPR006447Myb domain, plants
PfamPF002496.9E-6207254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MTVEETKSEN KDHDKFPVGL RVLAVDDDPM CLKLLDTLLR KCQYHVTATS QARTALKLLR  60
ENKDRFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSA NGDPELVMKG VRHGACDYLV  120
KPVRIEELRN IWQHVVRRKK FDSNKQKKSP VYAKYHHENG EGHGTTSRND ADQNGKINKK  180
RRDDDDENED GHESEDPATQ KKPRVIWSIE LHRKFVSAVN HLGIEKAFPK RILDLMGVEG  240
LTRENVASHL QKYRLYLKRI SSVATQQANM AATFGADGSH LMRMASFQGL QTFRNLSGQG  300
GLSKVTLSPY TTCGGLLGRL NSPANLSVTS SALGTTNLAV SLSSENTSLF PGIRSSLEQD  360
QLQQNVVNVN SVNDSRIFMA GTTFTGTQQL IGGSRNYLIS GPDNPTMVLE SGSSLNMASS  420
NSEYFNSSFT TANMPQLPHN NLSNGPYPHC MKMNLPSTTM ELVPLENSRN NMQCQESLIG  480
NVQNMNQEHN ELRITNQSVG SNTSFASLNV PENGASTFEQ GKLESGFVSQ SYDSLDDLVS  540
SMIKLEHEGT MATPDYGFDD YCFGQGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-24200261364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV27414.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022869835.10.0two-component response regulator ARR12-like isoform X2
SwissprotB8B3I41e-130ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML51e-130ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A2G9GDC80.0A0A2G9GDC8_9LAMI; Two-component response regulator
STRINGXP_009757804.11e-179(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-112response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]