PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV27169.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 353aa    MW: 40050.1 Da    PI: 7.137
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV27169.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.4e-53151421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 + pGfrFhPtdeelv +yL++k+e+++l++ e ik+vdiyk++PwdLpk v+++ekewyf+++rd+ky++++r+nr+t sg+Wkatg+d++++s+ +++
  KZV27169.1  15 MLPGFRFHPTDEELVGFYLRRKLEQRPLPI-ELIKQVDIYKYDPWDLPKLVTTGEKEWYFYCPRDRKYRNSSRPNRVTGSGFWKATGTDRPIYSSdGTK 112
                 579***************************.89***************999999****************************************95666 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +glkk+Lvfy+gra kg ktdW+mhe+rl
  KZV27169.1 113 CIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142
                 7***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100557.31615174IPR003441NAC domain
SuperFamilySSF1019414.32E-5915174IPR003441NAC domain
PfamPF023651.3E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDDTNDLDKS IDDLMLPGFR FHPTDEELVG FYLRRKLEQR PLPIELIKQV DIYKYDPWDL  60
PKLVTTGEKE WYFYCPRDRK YRNSSRPNRV TGSGFWKATG TDRPIYSSDG TKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPSGPDAAS PPKKILDKNL PANDSWAICR IFKKINSVAH  180
RALSNSWAPL FPETTSPPDL FTQTTNQAHF SSDNLSSSPS ENNLQQAGFP AFNLPFYRPI  240
PTSKPSNDFL PIFSPPQNFS SFVNEPIKTP DCIDLDGSPL ISSHVIQEST ALEHEQGDLR  300
KNFSPKNVHS SWGDFRPMGF PFSFPPQGTW DSPPSCPSEI SSSTAYCDDK CYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-521717819169NO APICAL MERISTEM PROTEIN
1ut4_B5e-521717819169NO APICAL MERISTEM PROTEIN
1ut7_A5e-521717819169NO APICAL MERISTEM PROTEIN
1ut7_B5e-521717819169NO APICAL MERISTEM PROTEIN
4dul_A5e-521717819169NAC domain-containing protein 19
4dul_B5e-521717819169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV27169.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098618.11e-146putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-101FEZ_ARATH; Protein FEZ
TrEMBLA0A2Z7B6330.0A0A2Z7B633_9LAMI; Protein FEZ
STRINGXP_008230759.11e-140(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-101NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]