PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV27084.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 289aa    MW: 32667.1 Da    PI: 6.5116
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV27084.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF595.9e-1965114251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                 +i +ks +q +f+kR + + KKA  LSvLCd e+avi++s +gkl++y++
  KZV27084.1  65 KIVSKSSKQSSFIKRHACLVKKATDLSVLCDSEIAVIVYSDQGKLFDYAT 114
                 57899*******************************************86 PP
2K-box40.89.3e-151422131989
       K-box  19 qelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                  e+  L++++e+L+ +    +lG dL+s+s+++Lq+L qqL+++l  i+++K+ ll++q+e+++ + ++l++
  KZV27084.1 142 MEVGILREKMEKLKqNDDQYVLGRDLKSMSHEDLQELLQQLNEGLLCIKDRKEALLVQQLEQSRVQIESLER 213
                 68889********944456679*****************************************998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-1852115IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.68456116IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-2065132IPR002100Transcription factor, MADS-box
PfamPF003192.4E-1665112IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-117893IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-1193114IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.496137224IPR002487Transcription factor, K-box
PfamPF014863.7E-10141212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGTKTINSPS HHVEELQSLR EDDDQEVACE RCFQTAPLAD DCLFKDEHKK EGFRGKGKMD  60
PTGNKIVSKS SKQSSFIKRH ACLVKKATDL SVLCDSEIAV IVYSDQGKLF DYATSSMEQI  120
LTRFERCRRI KLGIPVNPDA EMEVGILREK MEKLKQNDDQ YVLGRDLKSM SHEDLQELLQ  180
QLNEGLLCIK DRKEALLVQQ LEQSRVQIES LERLSASTSY QPPLCIDYPP VTQTDFATGR  240
NVYRPEMACT EYANFAETSL QLGPSTSKVS GKRKAPHKGR SNPDTFLTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV27084.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7AYW60.0A0A2Z7AYW6_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-22MIKC_MADS family protein