PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV26970.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

Trihelix

Protein Properties

Length: 480aa MW: 54865.3 Da PI: 7.7941

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV26970.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.5	6.6e-27	86	162	1	76
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsess 76 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+ ++rs k+C+ek+enl k+ykk+keg+ +r+++++ KZV26970.1 86 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHAYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKH 162 8***********************************899***************************9865543 PP
2	trihelix	54.6	2.9e-17	347	427	2	84
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W++ ev Li++r+ +e+++++ g ++++ Wee++ km+ g+e s +C+ekwe++n+ k+ + +kk s++ c+y+++ KZV26970.1 347 WPEGEVSRLIQLRNGVESKFQQsGISEEAMWEEIATKMACSGYEMSGLRCREKWESINNNVLKCYKKRKKT-SRNI--CSYYQD 427 *******************835699************************************999984.5555..999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.073	79	144	IPR017877	Myb-like domain
Pfam	PF13837	5.0E-18	86	159	No hit	No description
CDD	cd12203	9.14E-19	86	151	No hit	No description
Pfam	PF13837	1.4E-12	346	429	No hit	No description
CDD	cd12203	1.24E-16	347	415	No hit	No description
PROSITE profile	PS50090	5.935	347	404	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MEDHPYGMAD LGQYRRALCQ PPQQGFLSSH WVLPCGMIMF CADNSTASAV PIGDNTTCVG 60 VTASSGGGGG GGGGGGGRGD SIVSGRWPRQ ETLTLLEIRS RLDSKFKEAN QKGPLWDEVS 120 RIMSEEHAYQ RSGKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRFNPNVS KISISSAKNK 180 ESYPGFSLSN SCEYDPTSSD DSENDPEIGD NDPNRRKRRG KRGWKVKIKD FIDIQMKKLM 240 DKQEAWIEKM METNEDREKE RILREEEWRK LDAERIERER NLWANKRALI EARDASLIDT 300 LHKMTRMESR SPQQQVMMMD NQNLSENYQI DDGSETINNH PKSDVFWPEG EVSRLIQLRN 360 GVESKFQQSG ISEEAMWEEI ATKMACSGYE MSGLRCREKW ESINNNVLKC YKKRKKTSRN 420 ICSYYQDYES FCSQGGGSYC DHTQLNRSSN SSVVANDTGN GIRDICLRYY EGDVHGRIVD

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MEDHPYGMAD LGQYRRALCQ PPQQGFLSSH WVLPCGMIMF CADNSTASAV PIGDNTTCVG  60
VTASSGGGGG GGGGGGGRGD SIVSGRWPRQ ETLTLLEIRS RLDSKFKEAN QKGPLWDEVS  120
RIMSEEHAYQ RSGKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRFNPNVS KISISSAKNK  180
ESYPGFSLSN SCEYDPTSSD DSENDPEIGD NDPNRRKRRG KRGWKVKIKD FIDIQMKKLM  240
DKQEAWIEKM METNEDREKE RILREEEWRK LDAERIERER NLWANKRALI EARDASLIDT  300
LHKMTRMESR SPQQQVMMMD NQNLSENYQI DDGSETINNH PKSDVFWPEG EVSRLIQLRN  360
GVESKFQQSG ISEEAMWEEI ATKMACSGYE MSGLRCREKW ESINNNVLKC YKKRKKTSRN  420
ICSYYQDYES FCSQGGGSYC DHTQLNRSSN SSVVANDTGN GIRDICLRYY EGDVHGRIVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	411	415	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV26970.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094408.1	1e-150	trihelix transcription factor PTL
Swissprot	Q9LZS0	1e-91	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A2Z7B145	0.0	A0A2Z7B145_9LAMI; Trihelix transcription factor PTL
STRING	VIT_08s0007g03820.t01	1e-136	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	7e-86	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]