PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV26772.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 197aa    MW: 21426.7 Da    PI: 5.369
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV26772.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-184190255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ykGVr++  +g+Wv+eIr+p   + r +r++lg+f+t ++Aa a++ a++kl+g
  KZV26772.1 41 TYKGVRQRT-WGKWVSEIREP---N-RgQRVWLGTFDTSYDAAVAYDVAARKLYG 90
                69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.74E-1840100No hitNo description
SMARTSM003801.7E-3541104IPR001471AP2/ERF domain
PfamPF008471.6E-114190IPR001471AP2/ERF domain
PROSITE profilePS5103221.6284198IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-204199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-294199IPR001471AP2/ERF domain
PRINTSPR003672.2E-94253IPR001471AP2/ERF domain
PRINTSPR003672.2E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MLKSISPSRG EEKRARKSGA QATSRKGCMR GKGGPENAAC TYKGVRQRTW GKWVSEIREP  60
NRGQRVWLGT FDTSYDAAVA YDVAARKLYG PDTKLNLPHL YQDQSPPTDC LATEKQENGE  120
SHESPSNQEM AAVGGGEQGA GGILQNLNVN LPEFDDSSLW DEAAKDTSFR IVDDLGALGS  180
NLDSGKDSNG LPFAWIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-164298663ATERF1
3gcc_A5e-164298663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV26772.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083628.11e-84dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ22e-49DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2Z7B5H11e-144A0A2Z7B5H1_9LAMI; Dehydration-responsive element-binding protein 2D
STRINGMigut.C00778.1.p1e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]