PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV26754.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 249aa    MW: 28542.8 Da    PI: 6.6345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV26754.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +v ++G ++W+ Ia+  g++R++k+c++rw +yl
       KZV26754.1  9 KGPWTEEEDVQLVLYVSLFGDRRWDFIANVSGLKRSGKSCRLRWVNYL 56
                     79********************************************97 PP
2Myb_DNA-binding52.89e-1762107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++ E+ l ++++ ++G++ W++Ia++++ gRt++++k++w++y+
       KZV26754.1  62 RGKLSPHEERLVLELHSKWGNR-WSRIAQKLP-GRTDNEIKNHWRTYM 107
                      7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.845456IPR017930Myb domain
SuperFamilySSF466894.03E-297103IPR009057Homeodomain-like
SMARTSM007171.4E-14858IPR001005SANT/Myb domain
PfamPF002495.2E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-191063IPR009057Homeodomain-like
CDDcd001672.32E-101156No hitNo description
PROSITE profilePS5129426.3457111IPR017930Myb domain
SMARTSM007172.1E-1561109IPR001005SANT/Myb domain
PfamPF002494.9E-1562106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2364110IPR009057Homeodomain-like
CDDcd001676.12E-1166107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKDHEMRKG PWTEEEDVQL VLYVSLFGDR RWDFIANVSG LKRSGKSCRL RWVNYLHPGL  60
KRGKLSPHEE RLVLELHSKW GNRWSRIAQK LPGRTDNEIK NHWRTYMRKE AQQKKKKSAR  120
SPSSPSSSSS SSSSSSNPTL EFPPVTNERS FFDTGGLELV PGEKKTGGEI EDQSSNGYSM  180
DDILRNLEFA EENCNLTAQE MASSTCDYYP IESLWSIDIE EETKMLMQPM GGHDLLNSFP  240
YNNNYHTAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-2861111105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-27611124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV26754.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089823.18e-96transcription factor MYB48 isoform X1
SwissprotQ4JL847e-70MYB59_ARATH; Transcription factor MYB59
SwissprotQ9LX827e-70MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2Z7AXZ70.0A0A2Z7AXZ7_9LAMI; Myb family transcription factor family protein
STRINGVIT_06s0004g04140.t011e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.18e-70myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]