PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV26552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27794.4 Da PI: 5.4693 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++lv +++ G +W++ +++ g+ R++k+c++rw +yl KZV26552.1 14 KGPWSPEEDQILVSFIQKNGHANWRALPKEAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.4e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w++ KZV26552.1 67 RGNFTIEEEETIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.969 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.9E-30 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.61E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.814 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.33E-9 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVRAPCCEKM GLKKGPWSPE EDQILVSFIQ KNGHANWRAL PKEAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TIEEEETIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT QLKKRLKNNE 120 GSGDPSRRSL INMKFMENKN SDPVTGGTSP HQCSSEMSSV TDSSTGKEKM VFVKDEGIDY 180 SSEYFPRIDE TFWSEELSTD EVECPSPLNP IRCVEIGSRF DDSMDFWCNL LSRDAGIQDL 240 PEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-27 | 12 | 116 | 5 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV26552.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091315.1 | 1e-112 | myb-related protein Myb4 | ||||
Swissprot | Q9SJX8 | 1e-80 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A2Z7B4W2 | 0.0 | A0A2Z7B4W2_9LAMI; Myb-related protein Myb4 | ||||
STRING | XP_009629052.1 | 3e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-74 | myb domain protein 14 |
Publications ? help Back to Top | |||
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