PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV26193.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 320aa    MW: 35759.4 Da    PI: 8.5743
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV26193.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.5e-19242275134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C++C++ kTp+WR gp g+ktLCnaCG+++++ +
  KZV26193.1 242 CTHCQVQKTPQWRAGPLGPKTLCNACGVRFKSGR 275
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-744318IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.965236272IPR000679Zinc finger, GATA-type
SMARTSM004017.4E-15236290IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14239299No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14239273IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.49E-14241298No hitNo description
PfamPF003201.1E-16242275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MESIEARALK SSFLSQMAMK ANSQVLYNDD GWCVAGMNSV NYDDFPVEDL LNLDSPKKEF  60
QEGCVFQRPE QDEDQKKLPK ESKLQNSDVI SGELQSLSSG DLVVPVDELE NLEWLSQFVD  120
DSTSALSLLW PAGSFPGRNG RFSGNPPPLS MKARSPCFPL PIPTKPRSSR SRSNGRRWSL  180
PLSASESSST SLSSHGSSTL TTLFFENPVQ KTLWFSPLER PPAKKQKMKT DPDTGVVSGR  240
RCTHCQVQKT PQWRAGPLGP KTLCNACGVR FKSGRLFPEY RPACSPSFSQ DIHSNSHRKV  300
LEMRRRKENL VEPDLMVQSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV26193.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088480.21e-129GATA transcription factor 5-like
RefseqXP_020551667.11e-129GATA transcription factor 5-like
TrEMBLA0A2Z7AXJ60.0A0A2Z7AXJ6_9LAMI; GATA transcription factor
STRINGMigut.B00182.1.p1e-109(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-50GATA transcription factor 5