PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV26166.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 676aa    MW: 74324.1 Da    PI: 6.596
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV26166.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-23116217199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ l
  KZV26166.1 116 FAKTLTQSDANNGGGFSVPRYCAETIfprldytVDPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDL 210
                 89****************************996444445..8************************************************..4488999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  KZV26166.1 211 CVGIRRA 217
                 ****997 PP
2Auxin_resp109.63.2e-36278361183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+++ +FevvY+Prast+eF+vk++ v++al++++s G Rfkmafetedss++++ +Gt+++v+ +dpvrWp+S+Wr+L+
  KZV26166.1 278 AATLAASGHPFEVVYYPRASTPEFCVKASLVKAALQIRWSSGIRFKMAFETEDSSRISWfMGTISSVQVTDPVRWPDSPWRLLQ 361
                 688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-36109220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-29110219IPR015300DNA-binding pseudobarrel domain
CDDcd100172.28E-21115216No hitNo description
SMARTSM010192.3E-21116218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943116218IPR003340B3 DNA binding domain
PfamPF023622.4E-21116217IPR003340B3 DNA binding domain
PfamPF065074.0E-32278361IPR010525Auxin response factor
PROSITE profilePS5174511.058587667IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MESKEAVKES EKCLDSQLWH ACAGSMVQMP PVNSKVYYFP QGHAEHASGN VDYRNFPRIP  60
ACVPCKISAI KFMADLETDE VFAKIRLVPI SNDVDFDDEG VSGVNGPENQ EKPTSFAKTL  120
TQSDANNGGG FSVPRYCAET IFPRLDYTVD PPVQTILAKD VHGETWKFRH IYRGTPRRHL  180
LTTGWSTFVN HKKLVAGDSI VFLRAENGDL CVGIRRAKRG IGGGSEIPSG WNPAGANSAM  240
SYGGFSTFLR DDENKLARIG NGSLMGRERV KIETVVEAAT LAASGHPFEV VYYPRASTPE  300
FCVKASLVKA ALQIRWSSGI RFKMAFETED SSRISWFMGT ISSVQVTDPV RWPDSPWRLL  360
QVTWDEPDLL QNVKRVSPWL VELVSNMPAI HLSPFSPPRK KLRLPHQSDL PLESQLPFPF  420
LSGNNLLLGS SIPFGCRPDN TPAGMQGARH AQYALSLSDF HLSKLEPGLL PVGLKQGVVP  480
TGASIPFVAT NPGNTENISC SLTMGNSTQG GHKSDVLKAT PFVLFGQPIL TEKQMCTSCG  540
SDTVSSNHAG NSTTSHADKT GNTSDGSGSN RNDAAERTPC EDLNLETGHC EVFLESEDMG  600
RTLDLSLVGS YEELCRNLEN MFDTEISDPL NHVLYWDAKG AVKQLCEEPF SNFKMAAKRL  660
RILTKFMHRE CRSVDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-831438251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV26166.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094651.10.0auxin response factor 18
RefseqXP_011094652.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2Z7AXP70.0A0A2Z7AXP7_9LAMI; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]