PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV25835.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TALE
Protein Properties Length: 312aa    MW: 35395.6 Da    PI: 4.9531
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV25835.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.6e-092512832355
                 SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  KZV25835.1 251 PYPTEEEKNRLSEMTGLDQKQINNWFINQRKRH 283
                 8*****************************885 PP
2ELK391.7e-13203224122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK++L+rKYsgyL+sL++EF+
  KZV25835.1 203 ELKQMLMRKYSGYLSSLRKEFL 224
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.0E-205094IPR005540KNOX1
PfamPF037903.2E-205292IPR005540KNOX1
SMARTSM012569.5E-2798149IPR005541KNOX2
PfamPF037913.7E-25101148IPR005541KNOX2
SMARTSM011881500107127IPR005539ELK domain
SMARTSM011882.8E-7203224IPR005539ELK domain
PfamPF037892.3E-10203224IPR005539ELK domain
PROSITE profilePS5121311.366203223IPR005539ELK domain
PROSITE profilePS5007112.681223286IPR001356Homeobox domain
SuperFamilySSF466891.03E-18225295IPR009057Homeodomain-like
SMARTSM003891.3E-11225290IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-25228288IPR009057Homeodomain-like
CDDcd000861.20E-12239286No hitNo description
PfamPF059207.9E-17243282IPR008422Homeobox KN domain
PROSITE patternPS000270261284IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDELYGFHCS VDVGFNGDGN SIGVEQMVLT AQVAEIHGGL TSGITSEMSD IIKAQIAYHP  60
LYPHLLSAYV ECRKVGAPPE MVSLLEEISR ENYPLSSCSS EIGADPELDE FMRSYCEVLH  120
KYKEELSRPF DEATSFLSSI ESQLNDLCKE TLPSVTNNSS LTPPSKYHSA DDVGGRSDED  180
ASCGELEASE SLESCFNQQG DEELKQMLMR KYSGYLSSLR KEFLKKRKKG KLPKNARTAL  240
LHWWNTHYRW PYPTEEEKNR LSEMTGLDQK QINNWFINQR KRHWRPLEDM RFAVMEGVSG  300
GVNHNYNVID GS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218227LRKEFLKKRK
2224228KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV25835.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087493.11e-152homeobox protein knotted-1-like 1
SwissprotQ9FP295e-97KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A2Z7AVG30.0A0A2Z7AVG3_9LAMI; Homeobox protein knotted-1-like 1
STRINGVIT_14s0060g01180.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.17e-76KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]