PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV25822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 479aa MW: 52744.1 Da PI: 7.2122 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.8e-09 | 310 | 357 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq KZV25822.1 310 AHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 357 8*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.70E-11 | 304 | 361 | No hit | No description |
SuperFamily | SSF47459 | 1.02E-16 | 304 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.548 | 306 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 306 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-6 | 310 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 312 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 479 aa Download sequence Send to blast |
MDKNRPLILN ELNCSFFNPT WEVSLDQNDP FESAMSSMVS SPTASSGNCK NGDNMVLKEL 60 IGKLGTICNS GEISPQKSFK FNESANTSCY STPLSSPPKP GLLMMENPQI RGNLQIPGCH 120 FPPLPNLVPL SSDSGFADRA ARLSCFGNMG YNEMWVKLDS DKLSRVSSSQ SLKFPGSHLM 180 GVQENRDAAL LKKSTKVPAN ENVEIGDSRE NSSVSEQIPC GETGLICQND ANTRKRKSGQ 240 RGKAKETPAS TVTKDANVVA SENSESNTKR SKSEDGNSNQ KQLNDNNSKP SEAPKDYIHV 300 RARRGQATDA HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV 360 EFLSMKLSIV NPRTDINMDA LMSKDMFQSR GSLTQDVYPI HGYTFQSDAP FQVNHFALGR 420 NQTGQLPSVE SFSQVSSQVS TFWDDELHSI VQMGFGQNEA STQTFHGALP PTTHMKVEP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 232 | 237 | TRKRKS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV25822.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084194.2 | 0.0 | transcription factor bHLH78 | ||||
TrEMBL | A0A2Z7B2S3 | 0.0 | A0A2Z7B2S3_9LAMI; Uncharacterized protein | ||||
STRING | VIT_05s0029g00390.t01 | 1e-168 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07340.1 | 7e-78 | bHLH family protein |