PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV25786.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 846aa    MW: 94449.5 Da    PI: 6.3765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV25786.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.7e-19331430198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k+l+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g+ W++++++  +++s++yvl+ G     +  ++++gD+v+F++++  +++lv++
  KZV25786.1 331 FEKILSASDAGRIGRLVLPKACAEAYfpPINQSEGIPIRIQDIKGKHWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQVQAGDIVTFSRID-PGGQLVIG 427
                 99**************************777788999***************9989999999***9.********************887.88888888 PP

                 EE- CS
          B3  96 vfr 98 
                  ++
  KZV25786.1 428 CRK 430
                 876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-27326432IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-19328428IPR015300DNA-binding pseudobarrel domain
CDDcd100178.62E-23329430No hitNo description
PROSITE profilePS5086310.419331432IPR003340B3 DNA binding domain
SMARTSM010191.2E-19331431IPR003340B3 DNA binding domain
PfamPF023627.8E-16331430IPR003340B3 DNA binding domain
PROSITE profilePS5105012.037553603IPR011124Zinc finger, CW-type
PfamPF074963.5E-9560600IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MGSKNCMNEA CRTTTSSEWK KGWSLKSGGF ATLCYNCGSA YENSVFCETF HFKESGWREC  60
RLCGKLIHCG CTTSRYLYEY MDFGGISCLS CAKHLEIQPV QPVQDDYMVL ILEWFMQTPG  120
DLSHGAFMTN GVNDVYPLVT EHKRNDDKFS TDRLLRLTKA VGANDVISKL EQVRREESML  180
RTVDTQSCVS NLRQQCSSSA FLKPDIDRPK KEVKDTFESL TQQSQFSLAT PLGSSTSVLP  240
FRGEITEGIE QNKSSFQLGK NTKQSLSKPI KHSTAAGSET HKGNIAQKRF ARPPADGRGR  300
TQLLPRYWPK ITDQELQQLS GDLKSSIVPL FEKILSASDA GRIGRLVLPK ACAEAYFPPI  360
NQSEGIPIRI QDIKGKHWTF QFRFWPNNNS RMYVLEGVTP CIQNMQVQAG DIVTFSRIDP  420
GGQLVIGCRK ATNNGDVLDS HANLLPNGNS PGETSYSGVT ETFLPTGGRT SDESMQQSNP  480
VSEKKLRNIK NKRLLMHNDD AMELRITWEE AQELLRPSTS SKPTIVLIED LEFEEFDEPP  540
IFGKRTFFTS RLSGEEEQLA QCDICSKWRR LPVHALLSAK WTCSDNIWDS NRCSCSAADD  600
ISPQDLEALF ASNNEFKKRR ISDNVSKEGE PSGLDALATI AVLGDNIGDI GESSAGATTR  660
HPRHRPGCTC IVCIQPPSGK GKHEPTCKCN VCSTVKRRFK TLMMRKKKRQ SEREAELSQE  720
KDKPALAKNS SEKEEEEEDI AGNDLLNMNH HQENEDGNQM RLEEAKKGRL DLNCDPYREE  780
DVIAEEDGMS LTTLMNAATL PFDMFLGKPN GLPSLEAPVM KKEHNADSEG AMLPRVAGQE  840
NNPDNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-693094372130B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1695706KRRFKTLMMRKK
2695708KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV25786.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080654.20.0LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1
TrEMBLA0A2Z7AWL40.0A0A2Z7AWL4_9LAMI; Uncharacterized protein
STRINGMigut.D00818.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1