PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV25251.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 1488aa    MW: 168340 Da    PI: 6.5166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV25251.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013835858123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y+C +C  sF++k  L+ H +  H
  KZV25251.1 835 YVCAICLDSFTNKKVLEAHVQErH 858
                 9******************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003558.2801824IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280803824IPR007087Zinc finger, C2H2
SMARTSM003550.077835858IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621835858IPR007087Zinc finger, C2H2
PROSITE patternPS000280837859IPR007087Zinc finger, C2H2
SMARTSM003550.58869892IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280871892IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.055935963IPR007087Zinc finger, C2H2
SMARTSM003551.7935958IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280937958IPR007087Zinc finger, C2H2
SuperFamilySSF821993.01E-6711751476No hitNo description
Gene3DG3DSA:2.170.270.102.1E-7211761487No hitNo description
SMARTSM004688.4E-611821305IPR007728Pre-SET domain
PfamPF050335.3E-1211851313IPR007728Pre-SET domain
PROSITE profilePS508679.09812421318IPR007728Pre-SET domain
SMARTSM003179.0E-3213211471IPR001214SET domain
PROSITE profilePS5028015.84813211465IPR001214SET domain
PfamPF008564.6E-1413321463IPR001214SET domain
PROSITE profilePS508688.93814721488IPR003616Post-SET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006342Biological Processchromatin silencing
GO:1900109Biological Processregulation of histone H3-K9 dimethylation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1488 aa     Download sequence    Send to blast
METFPCSEQV GKEDHRANGV VLNGIESHEL GKNGGQFILE RFPSPEGCSN VDMYNDFDDG  60
QHLSGDSHYS EDDHLDHRDI FSGSDVALDQ SQIIFDTAES GLPNDKQEEL CHPVIRDIEL  120
DEAQAVWVKW RGKWQSGIRC ARADWPLMTV KAKPTHDRKQ YLVIFFPRTR NYSWADVLLV  180
RPINEYPEPI AYKTHKVGLK MVKDLTLARR FIMQKLAMSM LHILDQLHRE ALVETARDVV  240
VLKEFTMEAS QCKVYSDLGR MLLKLQNVKV LSFQLMILQS CQNSHWLQNS LQTWMQQCQN  300
ADSAESIEFL KEELNDSILW YEVNSRSSSA APMELGSDWK SWKQEVMKCF SVSHPLCSTV  360
GSNEPINDNA LAGGVQISRK RPKLEVRRAD THAFSSHHSA PSETNSTFFN GYGVVNCSAL  420
NPEAPTTVSS QDAATPAAYT GCVSDKWDDI IVEAGDVEVI KDVELIKDVE LIPAASVTPK  480
FQESGDRNRQ CIAFIESKGR QCVRYANEGD VYCCVHLASR FAGNSAKAEA VHSADSPMCG  540
GTTVLGTKCK HRALIGSAFC KKHRPLDGKN MTFPVPNVKR KIQETVVFQE SKDPTEFVLD  600
RVTETPAQVD PMLDMGKCCI SGSTMIENSE QLQQAHGSDE MAECIGSWPQ VGNESCLEIP  660
KRHSLYCEKH IPSWLKRARN GKTRIVSKEV FIDLLKDCHS REQNLQLHQA CELFYRLLKS  720
ILSLRNPVPK EVQFQWAISE ASKDPRVGEF LVKLVHHEKE RLTKLWGFGV REIQETSSNI  780
DELEPISVLK SRDGNLDENF IKCKICSEMF LDDQMLGKHW IDSHKKEVQW LFRGYVCAIC  840
LDSFTNKKVL EAHVQERHHV EFVEQCMLLQ CISCGSHFGN QDQLWLHVLS SHPSHLKLSN  900
DTLMQDDGSS QKVETEKQAP VKNSNPGDQL GTRRFICRFC GLKFDLLPDL GRHHQAAHMG  960
QNSTGPRLTK KGIQFYAHKL KSGRLTRPRF KRGLNSASYK IRNRLQSLKK SILPSKSVNP  1020
VDIIVQSNVP EVSTLGRLAD SQCSAVAKLL FSEIKITKLQ PSISEILSVA RSACCKVNLV  1080
ESLEVRYGNL PERIYLKAAK LCSEHDISVE WHREGFICPK GCTPGVRSPL LSPLVTSSDY  1140
TFKGRSIQSH LMTSEWTMDE CHCVIDSRHF SLDLSEKNII LCDDISFGQE SVPIACVVDE  1200
NLLNAQGNDE QISESFPWES FTYITKSLID QSLLLEAESS QLGCSCAHST CFSATCDHVY  1260
LFDNDYEDAK DIYGKPMNGR FPYDARGRII LEEGYLVYEC NQRCCCSRAC QNRVLQNGVQ  1320
LKLEIFKTEK KGWAVRAREA ILRGTFVCEY IGEVIDEQEA NERRDRYGKE GCRYFYEIDS  1380
HINDMSRLIE GQVPYVVDAT NYGNVSRYIN HSCSPNLVNH QVLVESMDSQ LAHIGLYANR  1440
DYSNALNLEY IEQISLGEEL TYNFRYKLLP GEGCLCLCGA SNCRGRLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4nvq_A3e-391180148413268Histone-lysine N-methyltransferase EHMT2
4nvq_B3e-391180148413268Histone-lysine N-methyltransferase EHMT2
5jhn_A2e-39118014846261Histone-lysine N-methyltransferase EHMT2
5jhn_B2e-39118014846261Histone-lysine N-methyltransferase EHMT2
5jin_A2e-39118014846261Histone-lysine N-methyltransferase EHMT2
5jin_B2e-39118014846261Histone-lysine N-methyltransferase EHMT2
5jiy_A2e-39118014846261Histone-lysine N-methyltransferase EHMT2
5jiy_B2e-39118014846261Histone-lysine N-methyltransferase EHMT2
5jj0_A2e-39118014846261Histone-lysine N-methyltransferase EHMT2
5jj0_B2e-39118014846261Histone-lysine N-methyltransferase EHMT2
5t0k_A3e-39118014849264Histone-lysine N-methyltransferase EHMT2
5t0k_B3e-39118014849264Histone-lysine N-methyltransferase EHMT2
5t0m_A3e-39118014849264Histone-lysine N-methyltransferase EHMT2
5t0m_B3e-39118014849264Histone-lysine N-methyltransferase EHMT2
5tuy_A2e-39118014841256Histone-lysine N-methyltransferase EHMT2
5tuy_B2e-39118014841256Histone-lysine N-methyltransferase EHMT2
5vsc_A2e-39118014846261Histone-lysine N-methyltransferase EHMT2
5vsc_B2e-39118014846261Histone-lysine N-methyltransferase EHMT2
5vse_A2e-39118014846261Histone-lysine N-methyltransferase EHMT2
5vse_B2e-39118014846261Histone-lysine N-methyltransferase EHMT2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone methyltransferase that functions together with its binding partner LDL1/SWP1 as one of the regulators of flower timing in Arabidopsis (PubMed:17224141). Mediates H3K9me2 deposition and regulates gene expression in a DNA methylation-independent manner. Binds DNA through its zinc fingers and represses the expression of a subset of stimulus response genes. May represent a novel mechanism for plants to regulate their chromatin and transcriptional state, which may allow for the adaptability and modulation necessary to rapidly respond to environment or developmental cues (PubMed:23071452). {ECO:0000269|PubMed:17224141, ECO:0000269|PubMed:23071452}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV25251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099261.10.0histone-lysine N-methyltransferase SUVR5
SwissprotO648270.0SUVR5_ARATH; Histone-lysine N-methyltransferase SUVR5
TrEMBLA0A2Z7ATJ90.0A0A2Z7ATJ9_9LAMI; Histone-lysine N-methyltransferase SUVR5
STRINGMigut.H00513.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA932334
Publications ? help Back to Top
  1. Baumbusch LO, et al.
    The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes.
    Nucleic Acids Res., 2001. 29(21): p. 4319-33
    [PMID:11691919]
  2. Caro E, et al.
    The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.
    PLoS Genet., 2012. 8(10): p. e1002995
    [PMID:23071452]