PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV25017.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TCP
Protein Properties Length: 326aa    MW: 36591.7 Da    PI: 8.6772
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV25017.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.97.6e-3043144389
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
                 g+kdrhsk+ T +g+RdRR+Rls+++a  ++dLq++LG+ ++sk ++WLl++ak  i+el+ ++ ++ s+c + ++  +s+s++  +            
  KZV25017.1  43 GGKDRHSKVFTVKGLRDRRIRLSVPTAVLLYDLQERLGLNQPSKVVDWLLKAAKDDIDELPPLQIPPGSSChNFHQILNSNSHQDFRsqhdkralltig 141
                 78******************************************************************9997333333333333322333334455555 PP

         TCP  89 ..k 89 
                    
  KZV25017.1 142 ggI 144
                 550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.08544102IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-2644136IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MIRKENTTCD DHANIFKPSS STSSKTWSRS NDPRIVRVSR TFGGKDRHSK VFTVKGLRDR  60
RIRLSVPTAV LLYDLQERLG LNQPSKVVDW LLKAAKDDID ELPPLQIPPG SSCHNFHQIL  120
NSNSHQDFRS QHDKRALLTI GGGISWLNHD QLKNPRSNFL WGSSKDAGLG EARDNEPKQG  180
NLHEEQGAYV PANNFLTGSN IGSSFLNIPA AVPYNSFLKW DPSNLTLSQY PPRNHTLSED  240
LHNLNLVQLP YSTLSVPFGS QQVLVYQPAG ISHSSFPSHV SATDTEFAPK DQTFQDLQLS  300
NSSNILQSQN SSRNERNKLD MEFHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1849103155Putative transcription factor PCF6
5zkt_B6e-1849103155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV25017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022860093.13e-86transcription factor TCP13-like
RefseqXP_022860094.13e-86transcription factor TCP13-like
TrEMBLA0A2Z7B0H80.0A0A2Z7B0H8_9LAMI; Uncharacterized protein
STRINGVIT_14s0068g00330.t014e-63(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5