PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV24735.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 1448aa MW: 161201 Da PI: 6.5091

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV24735.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0015	1415	1441	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg +F+ s++ rH r+ H KZV24735.1 1415 YVCKvkGCGLTFRFVSDFSRHRRKtgH 1441 99*********************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	2.4E-13	15	55	IPR003349	JmjN domain
PROSITE profile	PS51183	13.689	16	57	IPR003349	JmjN domain
Pfam	PF02375	2.2E-14	17	50	IPR003349	JmjN domain
SMART	SM00558	7.6E-44	297	466	IPR003347	JmjC domain
SuperFamily	SSF51197	4.12E-27	298	463	No hit	No description
PROSITE profile	PS51184	33.633	300	466	IPR003347	JmjC domain
Pfam	PF02373	9.6E-35	330	449	IPR003347	JmjC domain
SMART	SM00355	29	1332	1354	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.092	1355	1379	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.198	1355	1384	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.7E-5	1356	1392	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.1E-4	1356	1383	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1357	1379	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.5E-9	1384	1409	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0026	1385	1409	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.718	1385	1414	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1387	1409	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.47E-10	1395	1437	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.7E-10	1410	1438	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.35	1415	1441	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.974	1415	1441	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1417	1441	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009741	Biological Process	response to brassinosteroid
GO:0009826	Biological Process	unidimensional cell growth
GO:0033169	Biological Process	histone H3-K9 demethylation
GO:0048577	Biological Process	negative regulation of short-day photoperiodism, flowering
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1448 aa Download sequence Send to blast
MKNVEIPKWL EGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKVIP PFPKPSRKYV 60 LHNLNKSLSK CPELGSDVNP VASSKMDIVG DESCDRGVDG GECRAVFTTR QQELGCEKAK 120 RVKGMAVDQL LRCQKQVWQS GEVYTLEQFE AKSKHFAKSQ LGSVKEVNPL VIEAMFWEAA 180 SEKPIYVEYA NDVPGSGFSE PDGLLHYFHR RRRRRRKRNS YDRNNLVSSD SNNNELGISK 240 NISSGKDLDS NNTPILCKEI SQTTNSLETV QPQQTAGFSV NKDFSSSSEM QGTAGWKLSN 300 SPWNLQVIAR SPGSLTRFMP DDIPGVTSPM VYVGMLFSWF AWHVEDHDLH SLNFLHMGSP 360 KTWYAVPGDY AFNFEEVIRL RAYGGDVDRL TTLSLLGEKT TILSPEVIVA SGIPCCRLVQ 420 NPGEFVVTFP RAYHIGYSHG FNCGEAANFG TPKWLTVAKE AAVRRAAMNY LPMLSHQQLL 480 YLLTMSFISR IPRSLLPGAR SSRLRDRHRE ERELLVKKAF VADILVENNL LTLLLRRNSS 540 YHAVLWDAEL LPSSSRESQF CRDASNRTSA LAEKSFPQNE DNLEYISQLS KCINAVGFDL 600 NDDDLAYDFQ IDSGALPCVA CGILGFPLMA VLQPSEEASK NLLLEGMLVT PGVEVVKSLE 660 STFLSDHNQM DWVCTEGTRD KAKSNDMNES HLNEAVSMAE SSQFIRSSVE PSLVPERSSP 720 LNIEAFSAVG VTDRWNISNN FLKPRIFCLE HAMEIEELLC SKGGANVLVI CHSDFEKIKA 780 HAAVVAEEIT SPFHCNEVPL DNASQKDLNL IGAAVDSEEQ VDSAGDWTFQ LNINLRNCVN 840 AKKSSSSKTV QHLLTFGGLS CDVTPITNKS CLNWPSRKIR SRRQVKHMLS SKQPSCVKAV 900 EDVKSNLEQQ VVLNVDKIIQ YSRRKYKHRS SGGVGGLADA NNFILQDISD TNLIDPDTTA 960 KSMITSAAIR IENGGDGSYL PCASAAEGNS TPHDHCMFFP TGGFVGNYPP SDHAKSPITS 1020 LQVIEIAEAQ ASVCSLNEQR GKDKLENSCH DSQAHEIMAS GKSKEEHKLL SLENFDDSPK 1080 DENGICRSID NETLTSEQTI DEFDAASKKD FEVTENDIMG PCRIQSDGND MMEESSDRPD 1140 KSESLGDGLP SRADEKPEES FAEQRVLDSA MLKPSCSREL QDVHADGDNQ NGSFSRFTKL 1200 VNKSVSALAE ELEAPCKTYD TVESCSESGS NGSLQEKRES DDSNSTMAPS TSNAEPGNKR 1260 KREINLQTED QSLVGGFIKS PCEGLRSRTR KDADNKDKKK RVEVTVAIKK VRKTYNDPVS 1320 SKDKKEIQKG RHKCDLDGCS MSFQTKAELL LHKGNRCPVE GCRKKFNSHK YAIQHQRVHD 1380 DDRPLKCPWN GCTMSFKWAW ARTEHLRVHT GERPYVCKVK GCGLTFRFVS DFSRHRRKTG 1440 HYYVSTTS

Sequence ? help Back to Top

Protein Sequence Length: 1448 aa Download sequence Send to blast

MKNVEIPKWL EGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKVIP PFPKPSRKYV  60
LHNLNKSLSK CPELGSDVNP VASSKMDIVG DESCDRGVDG GECRAVFTTR QQELGCEKAK  120
RVKGMAVDQL LRCQKQVWQS GEVYTLEQFE AKSKHFAKSQ LGSVKEVNPL VIEAMFWEAA  180
SEKPIYVEYA NDVPGSGFSE PDGLLHYFHR RRRRRRKRNS YDRNNLVSSD SNNNELGISK  240
NISSGKDLDS NNTPILCKEI SQTTNSLETV QPQQTAGFSV NKDFSSSSEM QGTAGWKLSN  300
SPWNLQVIAR SPGSLTRFMP DDIPGVTSPM VYVGMLFSWF AWHVEDHDLH SLNFLHMGSP  360
KTWYAVPGDY AFNFEEVIRL RAYGGDVDRL TTLSLLGEKT TILSPEVIVA SGIPCCRLVQ  420
NPGEFVVTFP RAYHIGYSHG FNCGEAANFG TPKWLTVAKE AAVRRAAMNY LPMLSHQQLL  480
YLLTMSFISR IPRSLLPGAR SSRLRDRHRE ERELLVKKAF VADILVENNL LTLLLRRNSS  540
YHAVLWDAEL LPSSSRESQF CRDASNRTSA LAEKSFPQNE DNLEYISQLS KCINAVGFDL  600
NDDDLAYDFQ IDSGALPCVA CGILGFPLMA VLQPSEEASK NLLLEGMLVT PGVEVVKSLE  660
STFLSDHNQM DWVCTEGTRD KAKSNDMNES HLNEAVSMAE SSQFIRSSVE PSLVPERSSP  720
LNIEAFSAVG VTDRWNISNN FLKPRIFCLE HAMEIEELLC SKGGANVLVI CHSDFEKIKA  780
HAAVVAEEIT SPFHCNEVPL DNASQKDLNL IGAAVDSEEQ VDSAGDWTFQ LNINLRNCVN  840
AKKSSSSKTV QHLLTFGGLS CDVTPITNKS CLNWPSRKIR SRRQVKHMLS SKQPSCVKAV  900
EDVKSNLEQQ VVLNVDKIIQ YSRRKYKHRS SGGVGGLADA NNFILQDISD TNLIDPDTTA  960
KSMITSAAIR IENGGDGSYL PCASAAEGNS TPHDHCMFFP TGGFVGNYPP SDHAKSPITS  1020
LQVIEIAEAQ ASVCSLNEQR GKDKLENSCH DSQAHEIMAS GKSKEEHKLL SLENFDDSPK  1080
DENGICRSID NETLTSEQTI DEFDAASKKD FEVTENDIMG PCRIQSDGND MMEESSDRPD  1140
KSESLGDGLP SRADEKPEES FAEQRVLDSA MLKPSCSREL QDVHADGDNQ NGSFSRFTKL  1200
VNKSVSALAE ELEAPCKTYD TVESCSESGS NGSLQEKRES DDSNSTMAPS TSNAEPGNKR  1260
KREINLQTED QSLVGGFIKS PCEGLRSRTR KDADNKDKKK RVEVTVAIKK VRKTYNDPVS  1320
SKDKKEIQKG RHKCDLDGCS MSFQTKAELL LHKGNRCPVE GCRKKFNSHK YAIQHQRVHD  1380
DDRPLKCPWN GCTMSFKWAW ARTEHLRVHT GERPYVCKVK GCGLTFRFVS DFSRHRRKTG  1440
HYYVSTTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ip0_A	1e-54	274	480	139	346	Transcription factor jumonji (Jmj) family protein
6ip4_A	1e-54	274	480	139	346	Arabidopsis JMJ13
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	215	RRRRRRR
2	209	217	RRRRRRRKR
3	210	217	RRRRRRKR
4	211	217	RRRRRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269\|PubMed:15377760, ECO:0000269\|PubMed:18467490, ECO:0000269\|PubMed:19946624}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV24735.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084321.1	0.0	probable lysine-specific demethylase ELF6
Swissprot	Q6BDA0	0.0	ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBL	A0A2Z7ASC6	0.0	A0A2Z7ASC6_9LAMI; Uncharacterized protein
STRING	XP_009589507.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4835	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein

Publications ? help Back to Top
Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A. PLoS ONE, 2013. 8(7): p. e67987 [PMID:23976921] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Crevillén P, et al. Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state. Nature, 2014. 515(7528): p. 587-90 [PMID:25219852] Yang H,Howard M,Dean C Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74 [PMID:27482092]