PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV24683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 347aa MW: 38792.6 Da PI: 7.1698 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.6e-16 | 88 | 133 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ KZV24683.1 88 RGHWKPAEDTKLKELVAFYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 133 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53 | 8.1e-17 | 140 | 184 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+ E+++lv a++++G++ W++Ia+ ++ gRt++ +k++w+ + KZV24683.1 140 RTAFTEVEEDRLVAAHRLYGNK-WALIASLFP-GRTDNAVKNHWHVV 184 678*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.319 | 83 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 87 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 88 | 133 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.58E-27 | 88 | 181 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 89 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-12 | 91 | 132 | No hit | No description |
PROSITE profile | PS51294 | 24.905 | 135 | 189 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 139 | 187 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-14 | 140 | 183 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.26E-11 | 142 | 185 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 142 | 188 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MVGMDFSDLS SLSTDQNLEF YTQKVENPST CKAKGSDSCD GTEQNTADSI DLNASSTEDD 60 QESKISALCS GKDLTKIATN SPPKVWARGH WKPAEDTKLK ELVAFYGPQN WNLIAEKLEG 120 RSGKSCRLRW FNQLDPRINR TAFTEVEEDR LVAAHRLYGN KWALIASLFP GRTDNAVKNH 180 WHVVMARKYR EQSSSSRMKK MGQFDHCKKM DKNYDHLPLL NGTPAIRFAE LSPPIHGDGG 240 GRGSAHGSFG LWAPETYYGI APFLVCSSSE MKMMNIFNHT KSWSRTNSHI EFHLQSSLMG 300 APVQESHYMV TSPQHDQQVP AIDVNISSID DRRTGPTFID FLGVGAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-31 | 88 | 188 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-31 | 88 | 188 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-31 | 88 | 188 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV24683.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070989.1 | 1e-105 | transcriptional activator Myb | ||||
TrEMBL | A0A2Z7AT75 | 0.0 | A0A2Z7AT75_9LAMI; Myb-like protein Q |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 6e-71 | myb domain protein 105 |