PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24683.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 347aa    MW: 38792.6 Da    PI: 7.1698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24683.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-1688133147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
       KZV24683.1  88 RGHWKPAEDTKLKELVAFYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 133
                      899*****************************.***********996 PP

2Myb_DNA-binding538.1e-17140184147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+ E+++lv a++++G++ W++Ia+ ++ gRt++ +k++w+ +
       KZV24683.1 140 RTAFTEVEEDRLVAAHRLYGNK-WALIASLFP-GRTDNAVKNHWHVV 184
                      678*******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.31983134IPR017930Myb domain
SMARTSM007171.2E-1387136IPR001005SANT/Myb domain
PfamPF002492.0E-1588133IPR001005SANT/Myb domain
SuperFamilySSF466892.58E-2788181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-2489141IPR009057Homeodomain-like
CDDcd001671.30E-1291132No hitNo description
PROSITE profilePS5129424.905135189IPR017930Myb domain
SMARTSM007171.4E-14139187IPR001005SANT/Myb domain
PfamPF002493.3E-14140183IPR001005SANT/Myb domain
CDDcd001675.26E-11142185No hitNo description
Gene3DG3DSA:1.10.10.603.1E-19142188IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVGMDFSDLS SLSTDQNLEF YTQKVENPST CKAKGSDSCD GTEQNTADSI DLNASSTEDD  60
QESKISALCS GKDLTKIATN SPPKVWARGH WKPAEDTKLK ELVAFYGPQN WNLIAEKLEG  120
RSGKSCRLRW FNQLDPRINR TAFTEVEEDR LVAAHRLYGN KWALIASLFP GRTDNAVKNH  180
WHVVMARKYR EQSSSSRMKK MGQFDHCKKM DKNYDHLPLL NGTPAIRFAE LSPPIHGDGG  240
GRGSAHGSFG LWAPETYYGI APFLVCSSSE MKMMNIFNHT KSWSRTNSHI EFHLQSSLMG  300
APVQESHYMV TSPQHDQQVP AIDVNISSID DRRTGPTFID FLGVGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-31881884104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-31881884104C-Myb DNA-Binding Domain
1msf_C1e-31881884104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24683.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070989.11e-105transcriptional activator Myb
TrEMBLA0A2Z7AT750.0A0A2Z7AT75_9LAMI; Myb-like protein Q
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-71myb domain protein 105