PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24268.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 686aa    MW: 75741.7 Da    PI: 6.969
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24268.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-24123224199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++        +++ +  t+ ++d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF +   +++ l
  KZV24268.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILVKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--ADNGDL 217
                 89****************************986545444..8************************************************3..477888 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+v+r+
  KZV24268.1 218 CVGVRRA 224
                 ****996 PP
2Auxin_resp111.49e-37290373183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a ++ +FevvY Prast+eFvv+++ v++a++v+++ GmRfkmafetedss++++ +Gt+++v+  dpvrWp S+Wr+L+
  KZV24268.1 290 AANMAVNGRPFEVVYFPRASTPEFVVRASAVNAAMRVQWCSGMRFKMAFETEDSSRISWfMGTISSVHVEDPVRWPSSPWRLLQ 373
                 688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-29114224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-36116226IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-21122223No hitNo description
PROSITE profilePS5086313.437123225IPR003340B3 DNA binding domain
PfamPF023628.3E-22123224IPR003340B3 DNA binding domain
SMARTSM010192.4E-22123225IPR003340B3 DNA binding domain
PfamPF065071.4E-31290373IPR010525Auxin response factor
PROSITE profilePS5174512.813600683IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MTNVIHSLNK PMNKVEKILD PQLWHACAGG MAQIPPINSR VYYFPQGHAE YANKTVEFGG  60
FSRIPPLIPC KVSAIKYLAD TETDEVYAKI RLFPSRGDEC DGADEGVLLG FEKDEEKEKS  120
NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILVKDVHG EIWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RADNGDLCVG VRRAKKGIGG GVDGWNTGAA  240
NCADSLYRGF SGFFGENGSL CSGNAKKAGE NGEMGLKEKG SVRAESVVEA ANMAVNGRPF  300
EVVYFPRAST PEFVVRASAV NAAMRVQWCS GMRFKMAFET EDSSRISWFM GTISSVHVED  360
PVRWPSSPWR LLQVVWDEPD LLQNVKRVNP WLVELVSNIS AINLSRYSPP RKRPRFPQPS  420
EFPFVHLPMP PLLGNPLSPS SPLGFLHENI SAGIQGARHT EFGLSSSDLH FKKLQMGLQP  480
IDFKHLGYTG PLPKTATGNL PSGQTKFDAL SCTLKTGSST QDFEKNGEAK KPAFVLFGQP  540
ILTEQQLSQN DSSDQNQENT TNTSNGSGSG VIQNCPPEAS SDGEFPLWKD QKVELGYGVT  600
RLCKVFVESE DVGRTLDLSL LTSYEELYKK LASMFNLEQS DMSSNVVYSE LTGTTKHMGD  660
ESFSDFTKKA RRLTILMDSC SDNILK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-791839450388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076975.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2Z7ASC00.0A0A2Z7ASC0_9LAMI; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]