PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24267.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 278aa    MW: 30457.2 Da    PI: 6.7118
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24267.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16211244134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+ktLCnaCG+++++ +
  KZV24267.1 211 CLHCDMTKTPQWRAGPMGPKTLCNACGVRHKSGR 244
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.4E-671276IPR016679Transcription factor, GATA, plant
SMARTSM004018.7E-14205255IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.976209241IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14210268No hitNo description
CDDcd002025.91E-13210257No hitNo description
Gene3DG3DSA:3.30.50.103.5E-14210242IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440211236IPR000679Zinc finger, GATA-type
PfamPF003202.6E-14211244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDSNFMDEID CTAFFEQIDD FIEFPPENES GGVSLGTSSD SKDIPSTWDG ALPEKTDRLL  60
PGIRDTASSD LSPELFVPYE DIVQLEWLST FVEESFSGGG GSTIGKVVSC IDTGPSHDHF  120
QSPSPVSILD SNSNSSTSFS VEETTPSDTN HHGTQRARTK RPRPRTSNAR AAIQPISPAS  180
STELPPTKKV LKPVGLELYR KKKTIPPVKK CLHCDMTKTP QWRAGPMGPK TLCNACGVRH  240
KSGRLFPEYR PAASPTFLSS LHSNSHKKVM EMRSNIFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159163KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24267.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022890097.11e-106GATA transcription factor 8-like
RefseqXP_022890098.11e-106GATA transcription factor 8-like
TrEMBLA0A2Z7AYA40.0A0A2Z7AYA4_9LAMI; GATA transcription factor
STRINGXP_009760862.15e-94(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-37GATA family protein