PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV24229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 27276.5 Da PI: 5.2555 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 97 | 147 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f++ae Aa a+++a+ +++g KZV24229.1 97 SYRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFSMRG 147 69*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.76E-19 | 96 | 156 | No hit | No description |
Pfam | PF00847 | 5.2E-13 | 97 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-22 | 97 | 157 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.84 | 97 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-36 | 97 | 161 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 97 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 121 | 137 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDSSVFQCNY QYQFQYPLAE YSPESSSLDS PNSLSMEFHD FSLPFNMNDS EEMLLFGVLA 60 EGRVKEPSES NSNSSCKEEE VNSRAKRAGR EEKKEKSYRG VRKRPWGKYA AEIRDSTRNG 120 VRVWLGTFDS AEAAALAYDQ AAFSMRGCAA VLNFPVERVM ESLQEMKCGM EEEGCSPVIA 180 LKKKHSMRKK RSGVSSSSSS SKKISKNQEV GNVMVLEDLG VEYLEELLSC PSSSSSSHDI 240 SIWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-29 | 98 | 162 | 15 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 104 | KRAGREEKKEKSYRGVRKRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV24229.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019181066.1 | 8e-79 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 2e-68 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A2Z7AXP6 | 1e-178 | A0A2Z7AXP6_9LAMI; Ethylene-responsive transcription factor 1B | ||||
STRING | PGSC0003DMT400034873 | 2e-71 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 8e-47 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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