PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV23948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | WOX | ||||||||
Protein Properties | Length: 166aa MW: 19238.1 Da PI: 10.4274 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eq +L+el+ + p+ ++++ ++++l ++ ++V++WFqN++a++++ KZV23948.1 6 STRWCPTPEQRMILKELYSRgLTSPNSSQIQNITAHLslygKIHGKNVFYWFQNHKARQRQ 66 58*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 109 | 2.8e-35 | 6 | 67 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+PtpeQ +iL+ely++Gl +Pn+++iq+ita+L+ yGki++kNVfyWFQN+kaR+rqk KZV23948.1 6 STRWCPTPEQRMILKELYSRGLTSPNSSQIQNITAHLSLYGKIHGKNVFYWFQNHKARQRQK 67 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.2E-4 | 4 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00123 | 7 | 67 | No hit | No description |
SuperFamily | SSF46689 | 3.59E-10 | 7 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.4E-16 | 7 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-6 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.762 | 12 | 67 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MPPFSSTRWC PTPEQRMILK ELYSRGLTSP NSSQIQNITA HLSLYGKIHG KNVFYWFQNH 60 KARQRQKLRK KFAIAKQLQQ HQHYHHFHSF AGNFHPQLAF EANNGAVMKH AWCTAPQHLL 120 PRDDLMKIPT LPACCENRPL ETLQLFPLTS PGLTDHQQTT KASINF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV23948.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022854110.1 | 8e-46 | WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A2Z7ARB3 | 1e-121 | A0A2Z7ARB3_9LAMI; WUSCHEL-related homeobox 3-like | ||||
STRING | XP_010253422.1 | 1e-38 | (Nelumbo nucifera) | ||||
STRING | XP_010259966.1 | 3e-38 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 5e-36 | WOX family protein |