PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV23785.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | bHLH | ||||||||
Protein Properties | Length: 293aa MW: 32976.6 Da PI: 6.9547 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.1 | 2.1e-10 | 130 | 172 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++ ++f L l+P + kK++Ka++L A++Y k+Lq KZV23785.1 130 AERKRREKLSQRFIDLSALVPGL-----KKMDKASVLGDAIKYTKQLQ 172 7**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.27E-10 | 113 | 176 | No hit | No description |
PROSITE profile | PS50888 | 14.583 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-15 | 128 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-13 | 128 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 129 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-8 | 130 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00144 | 222 | 292 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDDPSFFHQW PVVSIVDLKS VSYGSPFAHE DPHNPFSLQP VPDHERALES TQHESSKPLK 60 LITSSTPSGA FHFIDEGISR PKMEAWTLDF PSESVVSESS TFGEKNYVVR ACERAKRVSS 120 NIGTKDSVLA ERKRREKLSQ RFIDLSALVP GLKKMDKASV LGDAIKYTKQ LQERVKILEH 180 QTKIKSIESV VFVKKHLHCS DSIVLSETLP EIEARFSDND VLINVQCERR NGLLERTVAE 240 IERHHLTVVN SSAMSFGHSA LYIVVMAKKD EDCGMNTKEV VQNLCTSLET LLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 135 | ERKRRE |
2 | 131 | 136 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV23785.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088147.1 | 5e-92 | transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 1e-47 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A2Z7APL4 | 0.0 | A0A2Z7APL4_9LAMI; Uncharacterized protein | ||||
STRING | POPTR_0009s08500.1 | 5e-79 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1760 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 6e-50 | bHLH family protein |