PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23678.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 474aa    MW: 50360.4 Da    PI: 7.5626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23678.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.64.3e-134873227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++ C +++rtG+C yGdrC+F+H++
  KZV23678.1 48 DEPVCIYYLRTGYCGYGDRCRFNHPR 73
                6899********************96 PP
2zf-CCCH37.73.4e-1295119327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C++++r+GtCk+G++Ck+ H++
  KZV23678.1  95 QPVCQYYMRNGTCKFGASCKYDHPK 119
                 689********************96 PP
3zf-CCCH37.44.1e-12139165127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+++++tG+Ck+G +CkF H++
  KZV23678.1 139 PGERECSYYLKTGQCKFGITCKFDHPQ 165
                 5789*********************97 PP
4zf-CCCH38.22.4e-12306332127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++Cr+++rtG Ck+G++Ck++H+p
  KZV23678.1 306 PGQPECRYYLRTGDCKFGSTCKYHHPP 332
                 5789*********************97 PP
5zf-CCCH37.25.1e-12352378127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++t+ C+++a++G Ck+G++CkF H++
  KZV23678.1 352 PGTSVCSHYAQNGVCKFGPSCKFDHPM 378
                 689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-64673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5254674IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-104873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-74874IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-75173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.73292120IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-792119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-694120IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-1095119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-597117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22138166IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5138165IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4144165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464305333IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6305332IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-10307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5309332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4311332IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6351378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962351379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6351379IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9352378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-6354376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MARYSGIQAM EGVPVEEWVG PGGETGLEEP MWRLGFGGGP DSYPERPDEP VCIYYLRTGY  60
CGYGDRCRFN HPRDRSVAVG TLSTGGQEYP ERVGQPVCQY YMRNGTCKFG ASCKYDHPKN  120
GVESPDPLSL NFYGYPLRPG ERECSYYLKT GQCKFGITCK FDHPQQSGIH MPPQAPVPGA  180
LAASAAIPVY PTVQSPVQSS QQYGLVSSNW PIARPTVLSG SYVPGNYGPL LLSPGVVPVP  240
GWTPYSVSVS PVVSPGTQPT GGAGPVYGLA QLSPSATAYT GPYLSVTSSV GLSSSSLEEH  300
AFPERPGQPE CRYYLRTGDC KFGSTCKYHH PPEWNARKTD FMLSLMGLPL RPGTSVCSHY  360
AQNGVCKFGP SCKFDHPMSI LSYSPSTSSL TDMPVAPYPV GSATATLAPS SSSSDLRPEI  420
LSGSKKDGFP SQVSSTNSSS SSVGSIFSNS DPLPSSSVPG GGNPSQGSKV RPST
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858954.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ5NAW21e-153C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A2Z7AQD90.0A0A2Z7AQD9_9LAMI; Zinc finger CCCH domain-containing protein 58-like
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-113C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]