PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV23315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 362aa MW: 40484.5 Da PI: 6.0056 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl KZV23315.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ +v++ ++lG++ W++Ia++++ Rt++++k++w+++l KZV23315.1 67 RGNFTEHEEKMIVHLQALLGNR-WAAIASYLP-LRTDNDIKNYWNTHL 112 89********************.*********.9***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.347 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.09E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.825 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.22E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPLRT DNDIKNYWNT HLRKKLGKPQ 120 GEDENGETDK NGKSPNSHSI TKGQWERRLQ TDIHMAKQAL CEALSLDESG TNSSTGLNLF 180 PKPLSIDRSD SNSSALGSNL FESSPQTYKN DQPIQKSTYA SSTENIARWL ADWTKKSPKS 240 SSESTSFNYP SMGSSSSPSE GTLISLASDV SVEDEAKLEA ADFTPETGII REPFSLLEKW 300 LLDDASAVQG QDGDFMDIAV LREAAEFVLK LFFFLSEQIS SVLMWAFRSF IYICSRTEIT 360 IV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 9e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 9e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00579 | DAP | Transfer from AT5G62470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV23315.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071639.1 | 1e-146 | myb-related protein 306 | ||||
Swissprot | P81392 | 1e-126 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A2Z7ANF2 | 0.0 | A0A2Z7ANF2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I00176.1.p | 1e-120 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.2 | 1e-104 | myb domain protein 96 |
Publications ? help Back to Top | |||
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