PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23274.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 278aa    MW: 30345.9 Da    PI: 8.8431
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23274.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.4e-202673249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                + en+sn qvtfskRrng++KKA+ELS+ C+ e av++fs+tgk y +
  KZV23274.1 26 KMENESNLQVTFSKRRNGLFKKASELSTRCGSEPAVVVFSPTGKPYSF 73
                679*****************************************8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-301776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.0531777IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-2518100IPR002100Transcription factor, MADS-box
CDDcd002652.75E-331885No hitNo description
PRINTSPR004042.7E-171939IPR002100Transcription factor, MADS-box
PfamPF003195.7E-242673IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-173954IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-175475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSTSGNNNGE DQTRKGKGRR KVAMEKMENE SNLQVTFSKR RNGLFKKASE LSTRCGSEPA  60
VVVFSPTGKP YSFGHPSVQS VTSRFVGQNE QNPQPTAVQL LASEAERNMI SNATAELNQA  120
MDQLELTKNQ AKDLDRICRQ VPKIAQMREA NNQQLAVLKR EVLVWRNKFN PGAPSTFLGS  180
NPNPGTTVVE PTGTCSFFDP PVGSNQQDGF SNQLYDPRFA GTSTSINFGE VSMWGDAGSG  240
FVTPYPPLPI DPAATIPMDP IHRNDAAGSS HKDAERRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23274.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7ANB80.0A0A2Z7ANB8_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-36AGAMOUS-like 62