PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV23257.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 385aa MW: 43213.4 Da PI: 6.3658

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV23257.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.3	6.3e-53	12	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 l pGfrFhPtdeelv +yL+kk+++k+l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ +++ KZV23257.1 12 LLPGFRFHPTDEELVGFYLRKKIQQKPLSI-ELIKQLDIYKYDPWDLPKLAATGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSqGSK 109 579*************************.89***********8888899**********************************995666 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg ktdW+mhe+rl KZV23257.1 110 CIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 139 7*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-57	11	171	IPR003441	NAC domain
PROSITE profile	PS51005	57.388	12	171	IPR003441	NAC domain
Pfam	PF02365	1.8E-25	14	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MEERNGEMDE FLLPGFRFHP TDEELVGFYL RKKIQQKPLS IELIKQLDIY KYDPWDLPKL 60 AATGEKEWYF YCPRDRKYRN STRPNRVTGA GFWKATGTDR PIYSSQGSKC IGLKKSLVFY 120 KGRAAKGIKT DWMMHEFRLP SVSDSALSTR YVDKLNIPAN EAWAICRIFK KVSSNTQRAI 180 SNNSWVSQVS DTNPFLVNKI QFSSSNMACS DHKTKYSPVG FGFFGGAGVQ QLSAASSFSL 240 PQPCKLGYDQ MEDKPTDQVS ISRGDTSDPV SQCTIDAANS LLLENISRSM FEYFDTSSDK 300 TDFSTLSGQC HGISAVFTED AQGNLGQGEE FVMVQNHVEQ FDVNMGFGNN SFPSSLGDAW 360 RSELLWNSSP CPSELSANYS TNNCN

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MEERNGEMDE FLLPGFRFHP TDEELVGFYL RKKIQQKPLS IELIKQLDIY KYDPWDLPKL  60
AATGEKEWYF YCPRDRKYRN STRPNRVTGA GFWKATGTDR PIYSSQGSKC IGLKKSLVFY  120
KGRAAKGIKT DWMMHEFRLP SVSDSALSTR YVDKLNIPAN EAWAICRIFK KVSSNTQRAI  180
SNNSWVSQVS DTNPFLVNKI QFSSSNMACS DHKTKYSPVG FGFFGGAGVQ QLSAASSFSL  240
PQPCKLGYDQ MEDKPTDQVS ISRGDTSDPV SQCTIDAANS LLLENISRSM FEYFDTSSDK  300
TDFSTLSGQC HGISAVFTED AQGNLGQGEE FVMVQNHVEQ FDVNMGFGNN SFPSSLGDAW  360
RSELLWNSSP CPSELSANYS TNNCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	12	174	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	12	174	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	12	174	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	12	174	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	12	174	20	171	NAC domain-containing protein 19
3swm_B	1e-53	12	174	20	171	NAC domain-containing protein 19
3swm_C	1e-53	12	174	20	171	NAC domain-containing protein 19
3swm_D	1e-53	12	174	20	171	NAC domain-containing protein 19
3swp_A	1e-53	12	174	20	171	NAC domain-containing protein 19
3swp_B	1e-53	12	174	20	171	NAC domain-containing protein 19
3swp_C	1e-53	12	174	20	171	NAC domain-containing protein 19
3swp_D	1e-53	12	174	20	171	NAC domain-containing protein 19
4dul_A	1e-53	12	174	17	168	NAC domain-containing protein 19
4dul_B	1e-53	12	174	17	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV23257.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071000.1	1e-154	putative NAC domain-containing protein 94
TrEMBL	A0A2Z7AV93	0.0	A0A2Z7AV93_9LAMI; Protein FEZ
STRING	VIT_01s0026g02360.t01	1e-135	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	7e-98	NAC family protein