PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23194.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29625.8 Da    PI: 8.6431
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23194.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.3e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krie+++ rqvtfskRr+g++KK +ELSvLCda++ +i+fss+gkl ey++
  KZV23194.1  9 KRIESNTSRQVTFSKRRAGLMKKTHELSVLCDAQIGLIVFSSKGKLTEYCT 59
                79***********************************************96 PP

2K-box691.6e-23931741596
       K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                  ++++el+++k+++ nLq ++ +++G+dL+s +++eL+qLeqqLe+s+ k+R++K +ll+eq+e+l+k e  l++en+++ +
  KZV23194.1  93 DQMYKELTQMKRQTLNLQLTLQRYKGDDLSSVQFEELRQLEQQLEHSVDKVRARKFQLLHEQLENLKKTESLLEKENQEMYQ 174
                 6799*************************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.838161IPR002100Transcription factor, MADS-box
CDDcd002651.72E-42276No hitNo description
SuperFamilySSF554555.62E-31279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014865.9E-2292175IPR002487Transcription factor, K-box
PROSITE profilePS5129714.82692184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGKIEVKR IESNTSRQVT FSKRRAGLMK KTHELSVLCD AQIGLIVFSS KGKLTEYCTP  60
QLSMKQMIDR YVQTKGISFP DGNDRTGPAP YNDQMYKELT QMKRQTLNLQ LTLQRYKGDD  120
LSSVQFEELR QLEQQLEHSV DKVRARKFQL LHEQLENLKK TESLLEKENQ EMYQWLMGSQ  180
IQKQAEIDHN QEAMKELRLM EQQPLLNQFP FFGDDIGEQP SSVLQLATMQ HPHSYRLQPT  240
HPNLQDHFGA TVRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17162162MEF2C
5f28_B5e-17162162MEF2C
5f28_C5e-17162162MEF2C
5f28_D5e-17162162MEF2C
6byy_A6e-17162162MEF2 CHIMERA
6byy_B6e-17162162MEF2 CHIMERA
6byy_C6e-17162162MEF2 CHIMERA
6byy_D6e-17162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23194.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843283.11e-130PREDICTED: MADS-box protein defh21
SwissprotQ8RVL41e-115DEF21_ANTMA; MADS-box protein defh21
TrEMBLA0A2Z7AN330.0A0A2Z7AN33_9LAMI; Uncharacterized protein
STRINGMigut.C01064.1.p1e-129(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-56MIKC_MADS family protein