PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23168.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 289aa    MW: 33037.9 Da    PI: 10.314
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23168.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l ++v q+G+ +W++Ia+++  gR++k+c++rw++ 
       KZV23168.1 18 RGHWRPAEDDQLRQLVLQYGPQNWNSIAEKLK-GRSGKSCRLRWFNQ 63
                     899****************************9.***********996 PP
2Myb_DNA-binding59.66.8e-1970113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++++G++ W++I+r ++ gRt++ +k++w+ 
       KZV23168.1  70 RRPFTEEEEERLLAAHRLHGNK-WALISRLFP-GRTDNAVKNHWHV 113
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0281364IPR017930Myb domain
SMARTSM007172.4E-131766IPR001005SANT/Myb domain
SuperFamilySSF466892.06E-2817111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-261971IPR009057Homeodomain-like
CDDcd001671.51E-122162No hitNo description
PfamPF139212.4E-162181No hitNo description
PROSITE profilePS5129428.0565119IPR017930Myb domain
SMARTSM007175.3E-1669117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2172118IPR009057Homeodomain-like
CDDcd001672.35E-781112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDETCGGSSD DTRSTCPRGH WRPAEDDQLR QLVLQYGPQN WNSIAEKLKG RSGKSCRLRW  60
FNQLDPRINR RPFTEEEEER LLAAHRLHGN KWALISRLFP GRTDNAVKNH WHVIMARKQR  120
ENSKFFNKKN RFQNLSPPIN YTKPSSNYVF RPKNSGIDEG FGNRISFENG GISKLRGQSS  180
SSLPFLWPLS NNLSSYYNSL DLLARKGQLV SSTSNSSHNE NNFPIFGAYG DLAAFHAFEN  240
SRNFSHTGEK SGHLHRMRSN TKHQIEEISV EKKNVPFIDF LGVGGSLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-31181184104MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-31181184104C-Myb DNA-Binding Domain
1msf_C8e-31181184104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23168.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101908.12e-97transcription factor MYB27
RefseqXP_020554996.12e-97transcription factor MYB27
TrEMBLA0A2Z7AP650.0A0A2Z7AP65_9LAMI; Myb domain protein 52
STRINGMigut.C01099.1.p3e-84(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.19e-57myb domain protein 105