PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23128.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 339aa    MW: 38218.9 Da    PI: 4.7379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23128.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.8e-11151194755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + Er+RR r+++++  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  KZV23128.1 151 ISERKRRGRMKEKLYALRSLVPNI-----TKMDKASIVGDAVLYLQDLQ 194
                 67*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.008144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16145209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-12146198No hitNo description
Gene3DG3DSA:4.10.280.104.3E-16146210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-8151194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDKYHYGSET FPFEDRNDFG LKDFMDEAIF DQFINLIRGE NATDSSINSS ILGYVGDEHN  60
NNCAGLVGQL FSPEPSMELF DFDISINHID YNKNNNNTNA LNKLAEEAAE AEAEDIFDGE  120
ESSATTTTAT AATATTSKKK GNKVDRSRTL ISERKRRGRM KEKLYALRSL VPNITKMDKA  180
SIVGDAVLYL QDLQMQLKKL KSEISDLESS FTTQDNLYQQ KTFQDSKKMD AKNFYPMVKK  240
ISKINVCQVE ERGFYVKIVS NKDEGVAVLL YRALELLPAF HVQSSNLAAF AHNYVLTFTI  300
HIQEGELGMN LPDLKLWIAG TFLEQGFDFE TSAFDSPGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137156KKKGNKVDRSRTLISERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23128.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022874306.11e-107transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A2Z7AP310.0A0A2Z7AP31_9LAMI; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
STRINGXP_009760156.14e-88(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37822340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.18e-64FER-like regulator of iron uptake