PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV22609.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 25931 Da PI: 9.9426 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H KZV22609.1 93 FSCNYCSRKFYSSQALGGHQNAH 115 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.54E-6 | 90 | 120 | No hit | No description |
PROSITE profile | PS50157 | 11.655 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MESPRLEPCN CSDTSTGIIS SPSSPCLKLE SSKKQTHMQM EESHVQESTS FDLVLDLSLS 60 NKDPVQELSL LRSQNSSSDP KSGGNNESEH RVFSCNYCSR KFYSSQALGG HQNAHKRERT 120 IAKRAGGIAS FAHRFSSMAS LPLHGSSNTS LGIQVHSMVQ KPGFFGFSTP SSSTFGRWPR 180 IWPPSSGKAA RFDGGRKLSP AAMDGSGRFR WDSSSLYLKI HNDQKDTKKL DLSLKL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV22609.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082208.1 | 1e-57 | zinc finger protein 1 | ||||
Swissprot | Q42485 | 4e-32 | ZFP1_ARATH; Zinc finger protein 1 | ||||
TrEMBL | A0A2Z7AT60 | 1e-173 | A0A2Z7AT60_9LAMI; Zinc finger protein 1 | ||||
STRING | VIT_09s0002g09080.t01 | 2e-53 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5827 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10970.1 | 2e-28 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|