PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV22500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HB-other | ||||||||
Protein Properties | Length: 2023aa MW: 225937 Da PI: 5.6084 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 476 | 532 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR+ t+ ql++Lee + ++yps+++r+eL++kl+Lt+rq ++WF+ rR k+kk KZV22500.1 476 RPKRQMKTPFQLQVLEETYSVEMYPSEATRAELSEKLSLTDRQLQMWFCHRRLKDKK 532 579****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR00817 | 9.5E-130 | 106 | 404 | IPR004696 | Triose phosphate/phosphoenolpyruvate translocator |
Pfam | PF03151 | 3.4E-109 | 107 | 394 | IPR004853 | Sugar phosphate transporter domain |
SuperFamily | SSF103481 | 1.16E-5 | 148 | 243 | No hit | No description |
SuperFamily | SSF103481 | 6.28E-5 | 323 | 395 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 452 | 533 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.11E-16 | 463 | 533 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.39 | 473 | 533 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-17 | 475 | 537 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.8E-16 | 476 | 532 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.56E-14 | 476 | 533 | No hit | No description |
PROSITE profile | PS50827 | 16.486 | 959 | 1018 | IPR018501 | DDT domain |
SMART | SM00571 | 1.2E-20 | 959 | 1018 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.1E-17 | 960 | 1015 | IPR018501 | DDT domain |
Pfam | PF05066 | 7.3E-13 | 1141 | 1208 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 3.0E-8 | 1299 | 1342 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.7E-11 | 1440 | 1512 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006810 | Biological Process | transport | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005215 | Molecular Function | transporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 2023 aa Download sequence Send to blast |
MESRVISGVT VRGVALPPKP AARLNGNCML PAVRLSGKLT DAGNLICGRQ LRPAVLLEAS 60 PTTVPISVVA KRPGLQPCHA AASSPADGGD SAGEAKVGFF KKYPALVTGF FFFMWYFLNV 120 IFNIMNKKIY NYFPYPYFVS VIHLFVGVIY CLLSWTVGLP KRAPIDSTLL KLLIPVAVCH 180 AIGHVTSNVS FAAVAVSFTH TVKALEPFFN AAASQFILGQ QIPITLWLSL APVVIGVSMA 240 SLTELSFNWL GFISAMISNI SFTYRSIYSK KAMTDMDSTN LYAYISIIAL IVCIPPAVIL 300 EGPQLMQHGF NDAIHKVGLT KFITDLFWVG LFYHLYNQLA TNTLERVAPL THAVGNVLKR 360 VFVIGFSIIV FGNKISLQTG IGTSIAIAGV AIYSFIKAKM EEEKREGDPE VVQGGLGTKG 420 GCSTPNESRR VVEERNDDEV TYHGGLCPVI GSGMEAGSEG EIDRNVNQSP TEVSKRPKRQ 480 MKTPFQLQVL EETYSVEMYP SEATRAELSE KLSLTDRQLQ MWFCHRRLKD KKEAAGMGAT 540 KTPPSGSGGR KDLPESPKEE RMAAEPGSRH GSGSVSGSGS GSGSDLGSGS GSESSSGQFD 600 NGDDMPMVAA VYHEASRTNM ERRVIACVEA QLGEPLREDG PILGIEFDEL PPGAFGAPIG 660 IFFPAAICHC LRDYTASSND PHEIIESQVR SDAYRHVAAP YLYDSPVDDG STAKSLSVVH 720 ENGHLPREYV TGGLVSSVDI NSQSGRQVQF ASSPRNAGFI AHNDNSVQID RKRKNDEVRI 780 GREVQAHEKR LRKELEKQEI LRRKREEQMR KDMERQDRER RKEELRMIRE QQRQEEKFQR 840 EERREMERRE KFMQKERLRL ERRKQKEEHR KEKEAARQKA AVERAAARRM AKESLELIED 900 DRLELMELAA SSKGLPSIVS LDYNTLQNLE SFREHMCDFP PKSVQLRMPF ATEPWVNSEE 960 NVGNLLMVWK FFVTFADVLG LWPFTLDEFL QAFHDYDSRL LCEIHIALLK LIVKDIEDVV 1020 RTPSGGPGTN QYSAVNPEGG HPRVVEGAYL WGFDIRNWQK HLNPLTWHEI LRQFALSAGF 1080 GPRLKKKVND RVSVNDVKEG KSCEDIVSTL RNGSAAENAI AIMQEKGFTL QRKSRHRLTP 1140 GTVKFAAYHV LALEGSRGLN VIDLAEKIQK SGLRDLTTSK TPEASISVAL SRDPILFERI 1200 APSTYCVRPA FRKDPADAES IIAAAKEKIQ KYAHGILSGQ NVDEEERDDD SESDIAEGAE 1260 VDAAATPFDG NENGECSNFG SFPKNVRLDQ GVEIDESGSG EPWVQGVTEG EYSDLSVEER 1320 LNALVALIGV ANEGNSIRVI LEDRMDAANA LKKQMWAEAQ IDKRRMREEI IYDPQTIILE 1380 KDLSSVVAGD TQNPIDTLVQ DAAVVQFVSP LQQNGCTSER SCSQLKSYIG HRAEEMYVYR 1440 SLPLGQDRRR NRYWQFVASA SSLDPGWGQI FFESPTGYWR LINSEEAFDS LLKSLDTRGA 1500 RESHLHIMLQ KIEVYFKECV RRNQFLTLTD QTINGGEDVA FEVIASVASA SIEIPSSDFC 1560 STRSDSWQPS TSFKFGCGRN ESKEKNLLKR YEDLRIWTWK ECFNPSNLRA QRYGKIWRMP 1620 LLGTCDVCLD IYNADLCPRC HWMHSHIDDR GKFSGDDLIE TNIDSLNSTS PIMRLIKAVL 1680 TFLEACIPSE GLHSFWTEEC RNSWGLKLQI ASSPKDLLQL LTQFEGAIKR DYLSADFETT 1740 EELLCYCASS RGATYAFACS GSALQLPWIP ETTAAKSASG KAFSNDVERA ETLEFDKYGL 1800 IKEDSRDRLH ETPSSFGYRN IRTRGGGRQR KKSQRGVKRP TSQSSRRSTK QSEALTILMQ 1860 QGVRTNGQRH GRGPRTIRRR RTEKKAVAEI LQDCLDNEST LKNKADKPRN SGGEELVNFS 1920 SKNTGTENDD NSIGMEAGDT DDDSNENLYE TAKWGTSPYD ATPNRSNEMM EMSEEEAEEI 1980 ENENGYYEEE GEDMELNGDD SDRDGDEIGD EESESAVSGE YSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y78_A | 1e-73 | 106 | 410 | 18 | 324 | Putative hexose phosphate translocator |
5y78_B | 1e-73 | 106 | 410 | 18 | 324 | Putative hexose phosphate translocator |
5y79_A | 1e-73 | 106 | 410 | 18 | 324 | Putative hexose phosphate translocator |
5y79_B | 1e-73 | 106 | 410 | 18 | 324 | Putative hexose phosphate translocator |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 525 | 532 | RRLKDKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV22500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096358.1 | 0.0 | homeobox-DDT domain protein RLT1 isoform X2 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A2Z7AMX7 | 0.0 | A0A2Z7AMX7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M01107.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |