PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV22177.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 318aa MW: 35748.5 Da PI: 6.5011 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.1 | 1.9e-07 | 118 | 139 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H KZV22177.1 118 FCEICGKGFKRDANLRMHMRAH 139 6*******************99 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 203 | 226 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + KZV22177.1 203 YSCNRCNkKSFSVVADLKSHLKHC 226 99*******************977 PP | |||||||
3 | zf-C2H2 | 10.7 | 0.0017 | 235 | 249 | 6 | 20 |
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L Hi KZV22177.1 235 CGTSFSRKDKLFGHI 249 **************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.49E-6 | 114 | 140 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-6 | 117 | 139 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0015 | 117 | 139 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.967 | 117 | 144 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.0017 | 118 | 137 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 119 | 139 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 59 | 165 | 198 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 13 | 203 | 225 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDSSSDPLAN LALVQSRMDS LHTLLSYSVN SGTLLGQPQM NMISSEINSA IRQIIVNGAA 60 LLSGTQFFPT HNQMKEEVPE NPVPIKDAKA QVHADDVLDD FDIVELDAVE LLAEHVHFCE 120 ICGKGFKRDA NLRMHMRAHG NQFKTPEALS KPSEMKVSTP RRMRFSCPYV GCNRNKQHKK 180 FRPLKSVICV KNHFKRSHCP KVYSCNRCNK KSFSVVADLK SHLKHCGESK WRCSCGTSFS 240 RKDKLFGHIV LFEGHMPAAD EEDDNDDDDD DLKDDNGVFE GMLLDELGPI DDFCFQDLMN 300 SPSSSNTIRS GIEGFFNF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV22177.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097563.1 | 1e-150 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 2e-77 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A2Z7AS20 | 0.0 | A0A2Z7AS20_9LAMI; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
STRING | Migut.L00137.1.p | 1e-137 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10000 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 2e-79 | C2H2 family protein |