PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV22125.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 278aa    MW: 30731.1 Da    PI: 5.8507
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV22125.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.11.1e-36101002101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+e++++isw+e+g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g++ell+ i+
    KZV22125.1  10 FLTKTYELVDDPETDDVISWNETGTTFVVWKTAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANDNFKRGERELLTGIH 97 
                   9***************************************************************9999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    KZV22125.1  98 RRK 100
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-38393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.9E-60699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.14E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.0E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MASRSVPAPF LTKTYELVDD PETDDVISWN ETGTTFVVWK TAEFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKTVPDKWEF ANDNFKRGER ELLTGIHRRK IASSQNPAGG KAAAADNQTS  120
PAISGEDLGS TSTSSPNSKN PSSLGTQASA QLAADLSDEN EKLRRDNQTL SSELTQTKKQ  180
CDELISYLTR RLNVSPEQVQ RIMMLESRAA CGDGGVVGGE LLDSDDDEDE NSMKLFGVVL  240
KKKRGRDENI HFSLAQSKSR APWVRISASP ENSGKVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-26510316123Heat shock factor protein 1
5d5u_B3e-2659925129Heat shock factor protein 1
5d5v_B3e-2659925129Heat shock factor protein 1
5d5v_D3e-2659925129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV22125.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099137.11e-129heat shock factor protein HSF24
SwissprotP223351e-103HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2Z7AJZ00.0A0A2Z7AJZ0_9LAMI; Uncharacterized protein
STRINGXP_009797839.11e-112(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.19e-80heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]