PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV21879.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 24851.2 Da PI: 9.7537 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.4e-20 | 109 | 159 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp+ r +r++lg++ taeeAa +++a+ +++g KZV21879.1 109 KKFRGVRRRP-WGKWAAEIRDPT----RrTRVWLGTYETAEEAALVYDEAAIRIHG 159 59********.**********84....34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 7.1E-43 | 5 | 213 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 1.08E-33 | 109 | 166 | No hit | No description |
SMART | SM00380 | 1.4E-36 | 110 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 110 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-22 | 110 | 167 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-13 | 110 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-30 | 110 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 111 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MIPRDTKRIK YSVHTTITTK VVSPPPLKET CKGSFSSKTP RLVRISVTDY DATDSSSDEC 60 ESEQNYLRVR KLMNEVRVEI NGHGSSVDVK KKTKKQRSMQ EHDLVGEGKK FRGVRRRPWG 120 KWAAEIRDPT RRTRVWLGTY ETAEEAALVY DEAAIRIHGR KAVTNFMAPP EMATTEPSGV 180 PVSCYDKESC HDKLCSPMSV LRFSNDHDSS NCGRSGSVRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 106 | 166 | 1 | 62 | ATERF1 |
3gcc_A | 6e-22 | 106 | 166 | 1 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV21879.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094793.1 | 3e-56 | pathogenesis-related genes transcriptional activator PTI6 | ||||
Refseq | XP_012844004.1 | 2e-56 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A2Z7AR94 | 1e-162 | A0A2Z7AR94_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B01832.1.p | 7e-56 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-46 | cytokinin response factor 4 |